CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000171737
(
Malus x domestica
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
MDP0000171737
T62530_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000171737
YTH
480
570
LFFSVNASGQFCGVAEMIGRVDFNKNMDFWQQDKWNGYFPVKWHIIKDIPNPQLRHIILENNENKPVTNSRDTQEVKLLQGIEMLNIFKNY
Links
Other
YTH
family RBPs
Other
Malus x domestica
RBPs
199 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
emb1441
Arabidopsis thaliana
AT5G49930-TAIR-G
N
0.000
BGIOSIBCE036979
Oryza indica
BGIOSIBCE036979
N
0.000
Cucsa.135100
Cucumis sativus
Cucsa.135100
N
0.000
e_gw1.117.3.1
Physcomitrella patens
e_gw1.117.3.1
N
0.000
Glyma09g03670.1
Glycine max
Glyma09g03670.1
N
0.000
Glyma15g14560.1
Glycine max
Glyma15g14560.1
N
0.000
GRMZM2G038516
Zea mays
GRMZM2G038516
N
0.000
GRMZM2G063544
Zea mays
GRMZM2G063544
N
0.000
GSVIVG00034941001
Vitis vinifera
GSVIVG00034941001
N
0.000
LjSGA_011995.1
Lotus japonicus
LjSGA_011995.1
N
0.000
LOC_Os12g37720
Oryza sativa
LOC_Os12g37720
N
0.000
MDP0000306612
Malus x domestica
MDP0000306612
N
0.000
Medtr2g037320
Medicago truncatula
Medtr2g037320
N
0.000
PDK_20s1341991g003
Phoenix dactylifera
PDK_20s1341991g003
N
0.000
PK11905.1
Cannabis sativa
PK11905.1
N
0.000
ppa000469m
Prunus persica
ppa000469m
N
0.000
SB08G018400
Sorghum bicolor
Sb08g018400
N
0.000