LjSGA_011995.1 (Lotus japonicus)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LjSGA_011995.1 T15914_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_011995.1 CCHC ZF 384 401

Links

Other CCHC ZF family RBPs
Other Lotus japonicus RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Medtr2g037320 Medicago truncatula Medtr2g037320 N 1.000
Glyma15g14560.1 Glycine max Glyma15g14560.1 N 0.944
Cucsa.135100 Cucumis sativus Cucsa.135100 N 0.889
SB08G018400 Sorghum bicolor Sb08g018400 N 0.889
Glyma09g03670.1 Glycine max Glyma09g03670.1 N 0.889
GRMZM2G038516 Zea mays GRMZM2G038516 N 0.889
GRMZM2G063544 Zea mays GRMZM2G063544 N 0.889
MDP0000306612 Malus x domestica MDP0000306612 N 0.889
LOC_Os12g37720 Oryza sativa LOC_Os12g37720 N 0.889
PK11905.1 Cannabis sativa PK11905.1 N 0.889
PDK_20s1341991g003 Phoenix dactylifera PDK_20s1341991g003 N 0.889
BGIOSIBCE036979 Oryza indica BGIOSIBCE036979 N 0.889
ppa000469m Prunus persica ppa000469m N 0.833
GSVIVG00034941001 Vitis vinifera GSVIVG00034941001 N 0.833
BRADI4G04650 Brachypodium distachyon BRADI4G04650 N 0.833
cassava22294.valid.m1 Manihot esculenta cassava22294.valid.m1 N 0.833
mgf009291m Mimulus guttatus mgf009291m N 0.833
29889.m003353 Ricinus communis 29889.m003353 N 0.833
B9HIJ8_POPTR Populus trichocarpa POPTR_0008s10060 N 0.833
emb1441 Arabidopsis thaliana AT5G49930-TAIR-G N 0.778
XM_002865719.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000738 N 0.778
e_gw1.117.3.1 Physcomitrella patens e_gw1.117.3.1 N 0.778
XP_001179009.1 Strongylocentrotus purpuratus XP_001179009.1 N 0.722
XP_001193544.1 Strongylocentrotus purpuratus XP_001193544.1 N 0.722