GRMZM2G038516 (Zea mays)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 GRMZM2G038516 T15019_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G038516_P01 CCHC ZF 1027 1044
GRMZM2G038516_P02 CCHC ZF 983 1000

Links

Other CCHC ZF family RBPs
Other Zea mays RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB08G018400 Sorghum bicolor Sb08g018400 N 1.000
GRMZM2G063544 Zea mays GRMZM2G063544 N 1.000
B9HIJ8_POPTR Populus trichocarpa POPTR_0008s10060 N 0.944
BGIOSIBCE036979 Oryza indica BGIOSIBCE036979 N 0.944
cassava22294.valid.m1 Manihot esculenta cassava22294.valid.m1 N 0.944
Cucsa.135100 Cucumis sativus Cucsa.135100 N 0.944
mgf009291m Mimulus guttatus mgf009291m N 0.944
Glyma15g14560.1 Glycine max Glyma15g14560.1 N 0.944
PDK_20s1341991g003 Phoenix dactylifera PDK_20s1341991g003 N 0.944
LOC_Os12g37720 Oryza sativa LOC_Os12g37720 N 0.944
29889.m003353 Ricinus communis 29889.m003353 N 0.889
Glyma09g03670.1 Glycine max Glyma09g03670.1 N 0.889
BRADI4G04650 Brachypodium distachyon BRADI4G04650 N 0.889
MDP0000306612 Malus x domestica MDP0000306612 N 0.889
LjSGA_011995.1 Lotus japonicus LjSGA_011995.1 N 0.889
PK11905.1 Cannabis sativa PK11905.1 N 0.889
Medtr2g037320 Medicago truncatula Medtr2g037320 N 0.889
ppa000469m Prunus persica ppa000469m N 0.833
GSVIVG00034941001 Vitis vinifera GSVIVG00034941001 N 0.778
e_gw1.117.3.1 Physcomitrella patens e_gw1.117.3.1 N 0.722
XP_001179009.1 Strongylocentrotus purpuratus XP_001179009.1 N 0.722
XM_002865719.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000738 N 0.722
emb1441 Arabidopsis thaliana AT5G49930-TAIR-G N 0.722
XP_001193544.1 Strongylocentrotus purpuratus XP_001193544.1 N 0.722