MDP0000171737 (Malus x domestica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 MDP0000171737 T62530_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000171737 YTH 480 570

Links

Other YTH family RBPs
Other Malus x domestica RBPs

199 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa003664m Prunus persica ppa003664m N 0.956
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.945
MDP0000231231 Malus x domestica MDP0000231231 N 0.945
MDP0000286471 Malus x domestica MDP0000286471 N 0.945
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.934
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.923
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.923
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.912
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.912
29955.m001158 Ricinus communis 29955.m001158 N 0.912
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.890
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.890
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.890
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.890
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.890
PK23104.1 Cannabis sativa PK23104.1 N 0.879
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.879
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.879
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.879
SB03G031190 Sorghum bicolor Sb03g031190 N 0.868
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.868
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.857
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.857
MDP0000405927 Malus x domestica MDP0000405927 N 0.846
MDP0000617859 Malus x domestica MDP0000617859 N 0.846
MDP0000287088 Malus x domestica MDP0000287088 N 0.846
MDP0000248088 Malus x domestica MDP0000248088 N 0.835
MDP0000552419 Malus x domestica MDP0000552419 N 0.835
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.824
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.824
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.824
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.824
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.824
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.824
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.824
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.824
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.824
PK26094.1 Cannabis sativa PK26094.1 N 0.824
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.824
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.824
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.824
ppa002588m Prunus persica ppa002588m N 0.824
ppa002483m Prunus persica ppa002483m N 0.824
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.813
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.813
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.813
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.813
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.813
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.813
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.813
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.813
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.813
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.813
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.802
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.802
ppa018635m Prunus persica ppa018635m N 0.802
PK02315.1 Cannabis sativa PK02315.1 N 0.802
mgf014829m Mimulus guttatus mgf014829m N 0.802
MDP0000256033 Malus x domestica MDP0000256033 N 0.802
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.802
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.802
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.802
mgf001716m Mimulus guttatus mgf001716m N 0.802
PK17832.1 Cannabis sativa PK17832.1 N 0.802
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.802
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.802
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.802
29889.m003364 Ricinus communis 29889.m003364 N 0.802
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.802
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.791
MDP0000132385 Malus x domestica MDP0000132385 N 0.791
SB07G024500 Sorghum bicolor Sb07g024500 N 0.791
MDP0000306387 Malus x domestica MDP0000306387 N 0.791
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.791
SB07G006330 Sorghum bicolor Sb07g006330 N 0.791
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.791
MDP0000488248 Malus x domestica MDP0000488248 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.780
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.780
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.780
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.780
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.780
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.780
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.780
ppa003557m Prunus persica ppa003557m N 0.780
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.780
mgf019821m Mimulus guttatus mgf019821m N 0.780
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.780
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.769
mgf014143m Mimulus guttatus mgf014143m N 0.769
mgf015583m Mimulus guttatus mgf015583m N 0.769
mgf017987m Mimulus guttatus mgf017987m N 0.769
PK01736.1 Cannabis sativa PK01736.1 N 0.769
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.769
29929.m004643 Ricinus communis 29929.m004643 N 0.769
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.758
29765.m000746 Ricinus communis 29765.m000746 N 0.758
mgf019846m Mimulus guttatus mgf019846m N 0.758
SB06G027960 Sorghum bicolor Sb06g027960 N 0.758
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.758
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.758
mgf009938m Mimulus guttatus mgf009938m N 0.758
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.758
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.758
mgf013853m Mimulus guttatus mgf013853m N 0.758
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.758
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.747
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.747
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.747
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.747
MDP0000124048 Malus x domestica MDP0000124048 N 0.747
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
MDP0000488588 Malus x domestica MDP0000488588 N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.747
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.747
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.747
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.747
29890.m000285 Ricinus communis 29890.m000285 N 0.747
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.747
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.736
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.736
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.736
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.736
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.736
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.736
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.736
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.736
mgf013935m Mimulus guttatus mgf013935m N 0.736
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.736
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.736
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.736
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.736
SB01G008170 Sorghum bicolor Sb01g008170 N 0.736
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.736
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.736
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.736
SB01G005500 Sorghum bicolor Sb01g005500 N 0.736
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.736
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.736
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.736
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.736
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.736
ppa002677m Prunus persica ppa002677m N 0.736
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.736
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.736
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.736
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.736
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.736
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.736
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.736
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.736
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.736
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.736
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.736
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.736
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.736
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.736
SB02G003990 Sorghum bicolor Sb02g003990 N 0.725
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.725
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.725
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.725
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.725
PK23716.1 Cannabis sativa PK23716.1 N 0.725
MDP0000718677 Malus x domestica MDP0000718677 N 0.725
MDP0000129009 Malus x domestica MDP0000129009 N 0.725
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.725
PK05579.1 Cannabis sativa PK05579.1 N 0.725
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.725
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.725
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.725
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.725
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.725
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.725
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.725
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.725
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.725
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.725
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.725
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.725
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.725
29950.m001140 Ricinus communis 29950.m001140 N 0.714
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.714
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.714
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.714
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.703
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.703
GRMZM2G098174 Zea mays GRMZM2G098174 N 0.703
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.703
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.703
MDP0000199885 Malus x domestica MDP0000199885 N 0.703
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.703
ECT11 Arabidopsis thaliana AT1G09810-TAIR-G N 0.703
XM_002892481.1 Arabidopsis lyrata fgenesh2_kg.1__1037__AT1G09810.1 N 0.703