CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCPOG00000012965
(
Cavia porcellus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSCPOG00000012965
T02407_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000011672
CCCH ZF
100
125
PKSVVCAFFKQGQCTKGDKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Cavia porcellus
RBPs
144 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPSG_04175
Coccidioides posadasii
CPSG_04175
N
0.000
fgenesh3_pg.112__20
Postia placenta
fgenesh3_pg.112__20
N
0.000
estExt_fgenesh3_pg.C_320041
Postia placenta
estExt_fgenesh3_pg.C_320041
N
0.000
LOC_Os10g25990
Oryza sativa
LOC_Os10g25990
N
0.000
PTTG_10344
Puccinia triticina
PTTG_10344
N
0.000
PTTG_08342
Puccinia triticina
PTTG_08342
N
0.000
PTTG_06629
Puccinia triticina
PTTG_06629
N
0.000
PTTG_06000
Puccinia triticina
PTTG_06000
N
0.000
PTTG_05310
Puccinia triticina
PTTG_05310
N
0.000
estExt_genemark.C_20724
Pleurotus ostreatus
estExt_genemark.C_20724
N
0.000