CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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UNKL
(
Gorilla gorilla
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSGGOG00000014915
T02767_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000014557
CCCH ZF
215
232
ARGHCVKNGLHCAFAHGP
ENSGGOP00000014557
CCCH ZF
470
496
YKSTKCNDMRQTGYCPRGPFCAFAHVE
ENSGGOP00000025433
CCCH ZF
81
105
VYCSKYNEATGVCPDGDECPYLHRT
ENSGGOP00000025433
CCCH ZF
288
314
YKSTKCNDMRQTGYCPRGPFCAFAHVE
Links
Other
CCCH ZF
family RBPs
Other
Gorilla gorilla
RBPs
62 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Q498L2
Xenopus laevis
Q498L2
N
0.000
Sltm
Rattus norvegicus
ENSRNOG00000013708
N
0.000
SLTM
Pteropus vampyrus
ENSPVAG00000015056
N
0.000
SAFB2
Pan troglodytes
ENSPTRG00000010334
N
0.000
SLTM
Pan troglodytes
ENSPTRG00000007121
N
0.000
ENSPPYG00000009427
Pongo pygmaeus
ENSPPYG00000009427
N
0.000
ENSPPYG00000006515
Pongo pygmaeus
ENSPPYG00000006515
N
0.000
SLTM
Oryzias latipes
ENSORLG00000008161
N
0.000
SLTM
Otolemur garnettii
ENSOGAG00000011297
N
0.000
SAFB2
Otolemur garnettii
ENSOGAG00000006855
N
0.000
SLTM
Oryctolagus cuniculus
ENSOCUG00000003327
N
0.000
SLTM
Ornithorhynchus anatinus
ENSOANG00000012311
N
0.000
Sltm
Mus musculus
ENSMUSG00000032212
N
0.000
SAFB2
Sorex araneus
ENSSARG00000000649
N
0.000
ENSSSCG00000004591
Sus scrofa
ENSSSCG00000004591
N
0.000
ENSSSCG00000004592
Sus scrofa
ENSSSCG00000004592
N
0.000
AAI00172
Xenopus laevis
AAI00172
N
0.000
Ame_R015170
Ailuropoda melanoleuca
Ame_R015170
N
0.000
sltm
Xenopus tropicalis
ENSXETG00000010840
N
0.000
SLTM
Vicugna pacos
ENSVPAG00000008606
N
0.000
SAFB2
Tursiops truncatus
ENSTTRG00000013585
N
0.000
SLTM
Tursiops truncatus
ENSTTRG00000005246
N
0.000
SLTM
Takifugu rubripes
ENSTRUG00000017767
N
0.000
SLTM
Tetraodon nigroviridis
ENSTNIG00000009334
N
0.000
SLTM
Taeniopygia guttata
ENSTGUG00000006017
N
0.000
SLTM
Tupaia belangeri
ENSTBEG00000000945
N
0.000
SAFB2
Spermophilus tridecemlineatus
ENSSTOG00000002758
N
0.000
ENSSSCG00000013523
Sus scrofa
ENSSSCG00000013523
N
0.000
XM_001377567.1
Monodelphis domestica
ENSMODG00000008794
N
0.000
SLTM
Macaca mulatta
ENSMMUG00000022200
N
0.000
SAFB2
Macaca mulatta
ENSMMUG00000017968
N
0.000
Sltm
Dipodomys ordii
ENSDORG00000007463
N
0.000
SLTM
Dasypus novemcinctus
ENSDNOG00000002975
N
0.000
ENSDARG00000017150
Danio rerio
ENSDARG00000017150
N
0.000
SLTM
Cavia porcellus
ENSCPOG00000026109
N
0.000
SLTM
Callithrix jacchus
ENSCJAG00000020395
N
0.000
SAFB2
Callithrix jacchus
ENSCJAG00000017205
N
0.000
SLTM
Choloepus hoffmanni
ENSCHOG00000001125
N
0.000
SAFB2
Canis familiaris
ENSCAFG00000018814
N
0.000
SLTM
Canis familiaris
ENSCAFG00000016586
N
0.000
SLTM
Bos taurus
ENSBTAG00000011319
N
0.000
SAFB2
Bos taurus
ENSBTAG00000001790
N
0.000
ENSACAG00000016893
Anolis carolinensis
ENSACAG00000016893
N
0.000
LOC100068259
Equus caballus
ENSECAG00000011267
N
0.000
LOC100064922
Equus caballus
ENSECAG00000018978
N
0.000
SLTM
Erinaceus europaeus
ENSEEUG00000000580
N
0.000
SLTM
Microcebus murinus
ENSMICG00000013069
N
0.000
SLTM
Meleagris gallopavo
ENSMGAG00000005313
N
0.000
SLTM
Loxodonta africana
ENSLAFG00000017922
N
0.000
SAFB2
Loxodonta africana
ENSLAFG00000003836
N
0.000
SAFB2
Gorilla gorilla
ENSGGOG00000015093
N
0.000
SLTM
Gallus gallus
ENSGALG00000004192
N
0.000
SLTM
Gasterosteus aculeatus
ENSGACG00000015814
N
0.000
SLTM
Homo sapiens
ENSG00000137776
N
0.000
SAFB2
Homo sapiens
ENSG00000130254
N
0.000
SAFB2
Felis catus
ENSFCAG00000011834
N
0.000
SLTM
Felis catus
ENSFCAG00000004826
N
0.000
SLTM
Echinops telfairi
ENSETEG00000008003
N
0.000
SLTM
Anolis carolinensis
ENSACAG00000015120
N
0.000