unk (Xenopus tropicalis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSXETG00000012578 T03638_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000027519 CCCH ZF 98 120
ENSXETP00000027519 CCCH ZF 302 328

Links

Other CCCH ZF family RBPs
Other Xenopus tropicalis RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH46725 Xenopus laevis AAH46725 N 0.980
RGD1565247 Rattus norvegicus ENSRNOG00000017598 N 0.804
D4A564_RAT Rattus norvegicus ENSRNOG00000006600 N 0.900
UNK Pteropus vampyrus ENSPVAG00000008460 N 0.920
UNK Pan troglodytes ENSPTRG00000009656 N 0.920
ENSPPYG00000008637 Pongo pygmaeus ENSPPYG00000008637 N 0.920
ENSPPYG00000006950 Pongo pygmaeus ENSPPYG00000006950 N 0.769
UNK Procavia capensis ENSPCAG00000004504 N 0.900
UNKL Oryzias latipes ENSORLG00000005070 N 0.863
UNK Ochotona princeps ENSOPRG00000012784 N 0.840
UNK Oryctolagus cuniculus ENSOCUG00000014994 N 0.920
Unk Mus musculus ENSMUSG00000020770 N 0.880
Unkl Mus musculus ENSMUSG00000015127 N 0.820
UNK Sus scrofa ENSSSCG00000017201 N 0.920
UNK Spermophilus tridecemlineatus ENSSTOG00000013344 N 0.920
UNK Taeniopygia guttata ENSTGUG00000008279 N 0.960
Ame_R007986 Ailuropoda melanoleuca Ame_R007986 N 0.900
estExt_Genewise1.C_sca_750115 Lottia gigantea estExt_Genewise1.C_sca_750115 N 0.860
e_gw.394.2.1 Branchiostoma floridae e_gw.394.2.1 N 0.780
188708 Helobdella robusta 188708 N 0.720
SNAPOd2T00019464001 Oikopleura dioica SNAPOd2T00019464001 N 0.800
PHUM219250 Pediculus humanus PHUM219250 N 0.780
ISCW001613 Ixodes scapularis ISCW001613 N 0.000
UNK Tursiops truncatus ENSTTRG00000015890 N 0.900
UNKL Takifugu rubripes ENSTRUG00000012086 N 0.824
UNK Takifugu rubripes ENSTRUG00000007192 N 0.900
UNKL Tetraodon nigroviridis ENSTNIG00000018588 N 0.804
UNKL Monodelphis domestica ENSMODG00000016188 N 0.882
UNK Monodelphis domestica ENSMODG00000007684 N 0.940
UNK Macaca mulatta ENSMMUG00000013646 N 0.920
Unk Dipodomys ordii ENSDORG00000008133 N 0.920
UNKL Danio rerio ENSDARG00000037838 N 0.863
unk Danio rerio ENSDARG00000000935 N 0.840
UNK Cavia porcellus ENSCPOG00000012679 N 0.920
UNKL Cavia porcellus ENSCPOG00000011846 N 0.824
LOC100390502 Callithrix jacchus ENSCJAG00000014056 N 0.920
UNKL Callithrix jacchus ENSCJAG00000013151 N 0.769
UNK_CANFA Canis familiaris ENSCAFG00000004925 N 0.920
A1A4K6_BOVIN Bos taurus ENSBTAG00000016287 N 0.920
UNKL Bos taurus ENSBTAG00000014126 N 0.769
UNK Anolis carolinensis ENSACAG00000007303 N 0.960
AGAP000684 Anopheles gambiae AGAP000684 N 0.824
LOC100067623 Equus caballus ENSECAG00000010641 N 0.788
UNK Equus caballus ENSECAG00000024672 N 0.920
UNK Felis catus ENSFCAG00000005757 N 0.922
UNK Myotis lucifugus ENSMLUG00000015453 N 0.900
UNKL Meleagris gallopavo ENSMGAG00000006920 N 0.843
UNK Macropus eugenii ENSMEUG00000004094 N 0.940
UNK Loxodonta africana ENSLAFG00000022662 N 0.920
UNKL Loxodonta africana ENSLAFG00000018262 N 0.824
UNKL Gorilla gorilla ENSGGOG00000014915 N 0.788
UNK Gorilla gorilla ENSGGOG00000009203 N 0.920
UNKL Gallus gallus ENSGALG00000006450 N 0.843
UNK Gallus gallus ENSGALG00000002278 N 0.960
UNK Gasterosteus aculeatus ENSGACG00000005102 N 0.885
UNK Homo sapiens ENSG00000132478 N 0.920
UNKL Homo sapiens ENSG00000059145 N 0.788
AAEL012456 Aedes aegypti AAEL012456 N 0.860