SNAPOd2T00019464001 (Oikopleura dioica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 SNAPOd2T00019464001 T04634_0.6 Genoscope (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00019464001 CCCH ZF 93 115
SNAPOd2T00019464001 CCCH ZF 278 304

Links

Other CCCH ZF family RBPs
Other Oikopleura dioica RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH46725 Xenopus laevis AAH46725 N 0.820
UNK Pteropus vampyrus ENSPVAG00000008460 N 0.780
UNK Pan troglodytes ENSPTRG00000009656 N 0.780
ENSPPYG00000008637 Pongo pygmaeus ENSPPYG00000008637 N 0.780
ENSPPYG00000006950 Pongo pygmaeus ENSPPYG00000006950 N 0.769
UNK Procavia capensis ENSPCAG00000004504 N 0.780
UNKL Oryzias latipes ENSORLG00000005070 N 0.843
UNK Ochotona princeps ENSOPRG00000012784 N 0.700
UNK Oryctolagus cuniculus ENSOCUG00000014994 N 0.780
Unk Mus musculus ENSMUSG00000020770 N 0.760
Unkl Mus musculus ENSMUSG00000015127 N 0.820
UNKL Monodelphis domestica ENSMODG00000016188 N 0.843
UNK Monodelphis domestica ENSMODG00000007684 N 0.800
D4A564_RAT Rattus norvegicus ENSRNOG00000006600 N 0.760
RGD1565247 Rattus norvegicus ENSRNOG00000017598 N 0.804
UNK Sus scrofa ENSSSCG00000017201 N 0.780
Ame_R007986 Ailuropoda melanoleuca Ame_R007986 N 0.760
estExt_Genewise1.C_sca_750115 Lottia gigantea estExt_Genewise1.C_sca_750115 N 0.800
e_gw.394.2.1 Branchiostoma floridae e_gw.394.2.1 N 0.780
188708 Helobdella robusta 188708 N 0.720
PHUM219250 Pediculus humanus PHUM219250 N 0.740
unk Xenopus tropicalis ENSXETG00000012578 N 0.800
UNK Tursiops truncatus ENSTTRG00000015890 N 0.760
UNKL Takifugu rubripes ENSTRUG00000012086 N 0.804
UNK Takifugu rubripes ENSTRUG00000007192 N 0.800
UNKL Tetraodon nigroviridis ENSTNIG00000018588 N 0.784
UNK Taeniopygia guttata ENSTGUG00000008279 N 0.800
UNK Spermophilus tridecemlineatus ENSSTOG00000013344 N 0.780
UNK Macaca mulatta ENSMMUG00000013646 N 0.780
UNK Myotis lucifugus ENSMLUG00000015453 N 0.780
Unk Dipodomys ordii ENSDORG00000008133 N 0.780
UNKL Danio rerio ENSDARG00000037838 N 0.843
unk Danio rerio ENSDARG00000000935 N 0.760
UNK Cavia porcellus ENSCPOG00000012679 N 0.780
UNKL Cavia porcellus ENSCPOG00000011846 N 0.824
LOC100390502 Callithrix jacchus ENSCJAG00000014056 N 0.780
UNKL Callithrix jacchus ENSCJAG00000013151 N 0.769
UNK_CANFA Canis familiaris ENSCAFG00000004925 N 0.780
A1A4K6_BOVIN Bos taurus ENSBTAG00000016287 N 0.780
UNKL Bos taurus ENSBTAG00000014126 N 0.750
UNK Anolis carolinensis ENSACAG00000007303 N 0.800
AGAP000684 Anopheles gambiae AGAP000684 N 0.765
LOC100067623 Equus caballus ENSECAG00000010641 N 0.788
UNK Equus caballus ENSECAG00000024672 N 0.780
UNK Felis catus ENSFCAG00000005757 N 0.784
UNKL Meleagris gallopavo ENSMGAG00000006920 N 0.824
UNK Meleagris gallopavo ENSMGAG00000004713 N 0.800
UNK Macropus eugenii ENSMEUG00000004094 N 0.800
UNK Loxodonta africana ENSLAFG00000022662 N 0.780
UNKL Loxodonta africana ENSLAFG00000018262 N 0.824
UNKL Gorilla gorilla ENSGGOG00000014915 N 0.788
UNK Gorilla gorilla ENSGGOG00000009203 N 0.780
UNKL Gallus gallus ENSGALG00000006450 N 0.824
UNK Gallus gallus ENSGALG00000002278 N 0.800
UNK Gasterosteus aculeatus ENSGACG00000005102 N 0.788
UNK Homo sapiens ENSG00000132478 N 0.780
UNKL Homo sapiens ENSG00000059145 N 0.788
AAEL012456 Aedes aegypti AAEL012456 N 0.780