fgeneshTA2_pg.C_scaffold_15000146 (Trichoplax adhaerens)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgeneshTA2_pg.C_scaffold_15000146 T05380_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshTA2_pg.C_scaffold_15000146 CCCH ZF 97 122

Links

Other CCCH ZF family RBPs
Other Trichoplax adhaerens RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ZC3H15 Sus scrofa ENSSSCG00000016026 N 0.769
LOC_Os01g61830 Oryza sativa LOC_Os01g61830 N 0.000
POPTR_0006s13510 Populus trichocarpa POPTR_0006s13510 N 0.000
B9HM02_POPTR Populus trichocarpa POPTR_0008s04540 N 0.000
B9MT73_POPTR Populus trichocarpa POPTR_0308s00200 N 0.000
SB03G039020 Sorghum bicolor Sb03g039020 N 0.000
29805.m001499 Ricinus communis 29805.m001499 N 0.000
72073 Helobdella robusta 72073 N 0.769
cassava28857.valid.m1 Manihot esculenta cassava28857.valid.m1 N 0.731
cassava28858.valid.m1 Manihot esculenta cassava28858.valid.m1 N 0.731
cassava3130.m1 Manihot esculenta cassava3130.m1 N 0.731
GSVIVG00016357001 Vitis vinifera GSVIVG00016357001 N 0.731
XM_002883888.1 Arabidopsis lyrata fgenesh2_kg.3__3143__AT2G20280.1 N 0.000
GK21573 Drosophila willistoni FBgn0223565 N 0.769
ZC3H15 Spermophilus tridecemlineatus ENSSTOG00000006873 N 0.769
ZC3H15 Tupaia belangeri ENSTBEG00000015530 N 0.769
ZC3H15 Taeniopygia guttata ENSTGUG00000011131 N 0.769
ZC3H15 Tetraodon nigroviridis ENSTNIG00000009860 N 0.846
ZC3H15 Takifugu rubripes ENSTRUG00000004988 N 0.808
ZC3H15 Tarsius syrichta ENSTSYG00000011019 N 0.769
ZC3H15 Tursiops truncatus ENSTTRG00000012425 N 0.769
ZC3H15 Vicugna pacos ENSVPAG00000006980 N 0.769
zc3h15 Xenopus tropicalis ENSXETG00000013336 N 0.808
GD10149 Drosophila simulans FBgn0181924 N 0.769
e_gw1.2.668.1 Sporobolomyces roseus e_gw1.2.668.1 N 0.000
e_gw1.3.744.1 Selaginella moellendorfii e_gw1.3.744.1 N 0.000
estExt_fgenesh1_pm.C_180201 Phytophthora capsici estExt_fgenesh1_pm.C_180201 N 0.000
fgenesh1_pg.C_scaffold_3139000003 Phytophthora capsici fgenesh1_pg.C_scaffold_3139000003 N 0.000
MDP0000161236 Malus x domestica MDP0000161236 N 0.000
Minc08580 Meloidogyne incognita Minc08580 N 0.731
PDK_20s1366191g001 Phoenix dactylifera PDK_20s1366191g001 N 0.000
ppa007639m Prunus persica ppa007639m N 0.000
ppa007903m Prunus persica ppa007903m N 0.731
XP_002158150.1 Hydra magnipapillata XP_002158150.1 N 0.000
AAH77826 Xenopus laevis AAH77826 N 0.769
BAD89267 Xenopus laevis BAD89267 N 0.769
chr5.LjT08O17.30.nd Lotus japonicus chr5.LjT08O17.30.nd N 0.000
Ame_R017931 Ailuropoda melanoleuca Ame_R017931 N 0.769
BGIBMGA011604 Bombyx mori BGIBMGA011604 N 0.731
estExt_Genewise1Plus.C_sca_2280007 Lottia gigantea estExt_Genewise1Plus.C_sca_2280007 N 0.731
estExt_gwp.C_6160004 Branchiostoma floridae estExt_gwp.C_6160004 N 0.769
Glyma03g33420.1 Glycine max Glyma03g33420.1 N 0.000
Glyma10g05550.1 Glycine max Glyma10g05550.1 N 0.000
Glyma13g19900.1 Glycine max Glyma13g19900.1 N 0.731
Glyma19g36150.1 Glycine max Glyma19g36150.1 N 0.000
gw1.233.15.1 Physcomitrella patens gw1.233.15.1 N 0.000
gwh2.4.391.1 Phanerochaete chrysosporium gwh2.4.391.1 N 0.000
s_451242 Phytophthora sojae s_451242 N 0.731
GRMZM2G032258 Zea mays GRMZM2G032258 N 0.000
Q6DD06 Xenopus laevis Q6DD06 N 0.769
ZC3H15 Sorex araneus ENSSARG00000012071 N 0.769
CLUG_02796 Candida lusitaniae CLUG_02796 N 0.000
DDB_G0292410 Dictyostelium discoideum DDB_G0292410 N 0.000
ZC3H15 Anolis carolinensis ENSACAG00000001916 N 0.808
ZC3HF_BOVIN Bos taurus ENSBTAG00000021762 N 0.769
ZC3H15 Canis familiaris ENSCAFG00000014494 N 0.769
ZC3H15 Choloepus hoffmanni ENSCHOG00000011958 N 0.769
ZC3H15 Callithrix jacchus ENSCJAG00000005931 N 0.769
ENSCPOG00000012965 Cavia porcellus ENSCPOG00000012965 N 0.769
zc3h15 Danio rerio ENSDARG00000015889 N 0.808
ZC3H15 Dasypus novemcinctus ENSDNOG00000018840 N 0.731
Zc3h15 Dipodomys ordii ENSDORG00000011664 N 0.769
BRADI2G54220 Brachypodium distachyon BRADI2G54220 N 0.000
BGIOSIBCE004176 Oryza indica BGIOSIBCE004176 N 0.000
AT2G20280 Arabidopsis thaliana AT2G20280-TAIR-G N 0.000
CPAG_03559 Candida parapsilosis CPAG_03559 N 0.731
CTRG_02162 Candida tropicalis CTRG_02162 N 0.000
PGUG_02031 Candida guilliermondii PGUG_02031 N 0.000
PITG_04608 Phytophthora infestans PITG_04608 N 0.000
SPPG_00188 Spizellomyces punctatus SPPG_00188 N 0.000
SPRG_03683 Saprolegnia parasitica SPRG_03683 N 0.000
PK12342.1 Cannabis sativa PK12342.1 N 0.000
amel4_ncbi_hmm11607 Apis mellifera amel4_ncbi_hmm11607 N 0.769
DGIL_AUG5s16g7t1 Acyrtosiphon pisum DGIL_AUG5s16g7t1 N 0.769
nasonia_NCBI_hmm1144383 Nasonia vitripennis nasonia_NCBI_hmm1144383 N 0.769
LOC100068634 Equus caballus ENSECAG00000017149 N 0.769
ENSETEG00000015556 Echinops telfairi ENSETEG00000015556 N 0.000
ENSOCUG00000011903 Oryctolagus cuniculus ENSOCUG00000011903 N 0.769
ENSOCUG00000011909 Oryctolagus cuniculus ENSOCUG00000011909 N 0.731
ZC3H15 Otolemur garnettii ENSOGAG00000002182 N 0.769
ENSOPRG00000015790 Ochotona princeps ENSOPRG00000015790 N 0.769
ZC3H15 Oryzias latipes ENSORLG00000018606 N 0.808
ZC3H15 Procavia capensis ENSPCAG00000008499 N 0.769
ENSPPYG00000013004 Pongo pygmaeus ENSPPYG00000013004 N 0.769
ZC3H15 Pan troglodytes ENSPTRG00000012717 N 0.769
ZC3H15 Pteropus vampyrus ENSPVAG00000004828 N 0.769
Zc3h15 Rattus norvegicus ENSRNOG00000005256 N 0.769
ZC3H15 Ornithorhynchus anatinus ENSOANG00000015742 N 0.769
Zc3h15 Mus musculus ENSMUSG00000027091 N 0.769
ITGAV Monodelphis domestica ENSMODG00000010653 N 0.769
ZC3H15 Felis catus ENSFCAG00000008213 N 0.769
ZC3H15 Homo sapiens ENSG00000065548 N 0.769
ZC3H15 Gasterosteus aculeatus ENSGACG00000011648 N 0.808
ZC3HF_CHICK Gallus gallus ENSGALG00000002670 N 0.769
ZC3H15 Gorilla gorilla ENSGGOG00000000073 N 0.769
ENSLAFG00000001563 Loxodonta africana ENSLAFG00000001563 N 0.808
ZC3H15 Meleagris gallopavo ENSMGAG00000004447 N 0.769
ZC3H15 Microcebus murinus ENSMICG00000014245 N 0.769
ZC3H15 Myotis lucifugus ENSMLUG00000007741 N 0.769
ZC3H15 Macaca mulatta ENSMMUG00000017248 N 0.769
RGD1564243 Rattus norvegicus ENSRNOG00000015276 N 0.731