CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgeneshTA2_pg.C_scaffold_15000146
(
Trichoplax adhaerens
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
fgeneshTA2_pg.C_scaffold_15000146
T05380_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgeneshTA2_pg.C_scaffold_15000146
CCCH ZF
97
122
PKSLLCAFYKQGNCSKGDKCKFSHDM
Links
Other
CCCH ZF
family RBPs
Other
Trichoplax adhaerens
RBPs
88 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PHUM521160
Pediculus humanus
PHUM521160
N
0.885
ZC3H15
Tetraodon nigroviridis
ENSTNIG00000009860
N
0.846
zc3h15
Xenopus tropicalis
ENSXETG00000013336
N
0.808
ZC3H15
Takifugu rubripes
ENSTRUG00000004988
N
0.808
ZC3H15
Oryzias latipes
ENSORLG00000018606
N
0.808
ZC3H15
Anolis carolinensis
ENSACAG00000001916
N
0.808
zc3h15
Danio rerio
ENSDARG00000015889
N
0.808
ENSLAFG00000001563
Loxodonta africana
ENSLAFG00000001563
N
0.808
ZC3H15
Gasterosteus aculeatus
ENSGACG00000011648
N
0.808
Aqu1.222312
Amphimedon queenslandica
Aqu1.222312
N
0.808
ZC3H15
Procavia capensis
ENSPCAG00000008499
N
0.769
ZC3H15
Otolemur garnettii
ENSOGAG00000002182
N
0.769
ENSOPRG00000015790
Ochotona princeps
ENSOPRG00000015790
N
0.769
ZC3H15
Ornithorhynchus anatinus
ENSOANG00000015742
N
0.769
ENSOCUG00000011903
Oryctolagus cuniculus
ENSOCUG00000011903
N
0.769
ZC3H15
Macaca mulatta
ENSMMUG00000017248
N
0.769
ZC3H15
Meleagris gallopavo
ENSMGAG00000004447
N
0.769
ZC3H15
Gorilla gorilla
ENSGGOG00000000073
N
0.769
ZC3H15
Microcebus murinus
ENSMICG00000014245
N
0.769
ZC3H15
Myotis lucifugus
ENSMLUG00000007741
N
0.769
ITGAV
Monodelphis domestica
ENSMODG00000010653
N
0.769
ENSPPYG00000013004
Pongo pygmaeus
ENSPPYG00000013004
N
0.769
Zc3h15
Mus musculus
ENSMUSG00000027091
N
0.769
Zc3h15
Rattus norvegicus
ENSRNOG00000005256
N
0.769
GD10149
Drosophila simulans
FBgn0181924
N
0.769
F27D4.4
Caenorhabditis elegans
F27D4.4
N
0.769
ZC3H15
Vicugna pacos
ENSVPAG00000006980
N
0.769
GK21573
Drosophila willistoni
FBgn0223565
N
0.769
72073
Helobdella robusta
72073
N
0.769
estExt_gwp.C_6160004
Branchiostoma floridae
estExt_gwp.C_6160004
N
0.769
e_gw.53.202.1
Nematostella vectensis
e_gw.53.202.1
N
0.769
ZC3H15
Tursiops truncatus
ENSTTRG00000012425
N
0.769
ZC3H15
Tarsius syrichta
ENSTSYG00000011019
N
0.769
ZC3H15
Sorex araneus
ENSSARG00000012071
N
0.769
ZC3H15
Homo sapiens
ENSG00000065548
N
0.769
ZC3H15
Pteropus vampyrus
ENSPVAG00000004828
N
0.769
ZC3H15
Sus scrofa
ENSSSCG00000016026
N
0.769
ZC3H15
Spermophilus tridecemlineatus
ENSSTOG00000006873
N
0.769
ZC3H15
Taeniopygia guttata
ENSTGUG00000011131
N
0.769
ZC3H15
Tupaia belangeri
ENSTBEG00000015530
N
0.769
ZC3H15
Pan troglodytes
ENSPTRG00000012717
N
0.769
ZC3HF_CHICK
Gallus gallus
ENSGALG00000002670
N
0.769
nasonia_NCBI_hmm1144383
Nasonia vitripennis
nasonia_NCBI_hmm1144383
N
0.769
DGIL_AUG5s16g7t1
Acyrtosiphon pisum
DGIL_AUG5s16g7t1
N
0.769
ZC3H15
Felis catus
ENSFCAG00000008213
N
0.769
An14g05330
Aspergillus niger
CADANGAG00011470
N
0.769
CBG00292
Caenorhabditis briggsae
CBG00292
N
0.769
NFIA_073040
Neosartorya fischeri
CADNFIAG00007899
N
0.769
amel4_ncbi_hmm11607
Apis mellifera
amel4_ncbi_hmm11607
N
0.769
Q6DD06
Xenopus laevis
Q6DD06
N
0.769
Ame_R017931
Ailuropoda melanoleuca
Ame_R017931
N
0.769
PASA_GEN_1200032
Daphnia pulex
PASA_GEN_1200032
N
0.769
fgenesh1_pg.00710_#_148
Aspergillus carbonarius
fgenesh1_pg.00710_#_148
N
0.769
AAH77826
Xenopus laevis
AAH77826
N
0.769
BAD89267
Xenopus laevis
BAD89267
N
0.769
CBN03898
Caenorhabditis brenneri
CBN03898
N
0.769
AFUA_5G13930
Aspergillus fumigatus
CADAFUAG00006431
N
0.769
LOC100068634
Equus caballus
ENSECAG00000017149
N
0.769
ENSCING00000006888
Ciona intestinalis
ENSCING00000006888
N
0.769
CBN11546
Caenorhabditis brenneri
CBN11546
N
0.769
ZC3H15
Callithrix jacchus
ENSCJAG00000005931
N
0.769
Zc3h15
Dipodomys ordii
ENSDORG00000011664
N
0.769
ENSCPOG00000012965
Cavia porcellus
ENSCPOG00000012965
N
0.769
ZC3H15
Choloepus hoffmanni
ENSCHOG00000011958
N
0.769
ZC3H15
Canis familiaris
ENSCAFG00000014494
N
0.769
CRE20408
Caenorhabditis remanei
CRE20408
N
0.769
ZC3HF_BOVIN
Bos taurus
ENSBTAG00000021762
N
0.769
CJA17052
Caenorhabditis japonica
CJA17052
N
0.769
GSVIVG00016357001
Vitis vinifera
GSVIVG00016357001
N
0.731
estExt_Genewise1Plus.C_sca_2280007
Lottia gigantea
estExt_Genewise1Plus.C_sca_2280007
N
0.731
Glyma13g19900.1
Glycine max
Glyma13g19900.1
N
0.731
s_451242
Phytophthora sojae
s_451242
N
0.731
BGIBMGA011604
Bombyx mori
BGIBMGA011604
N
0.731
Minc08580
Meloidogyne incognita
Minc08580
N
0.731
cassava3130.m1
Manihot esculenta
cassava3130.m1
N
0.731
cassava28857.valid.m1
Manihot esculenta
cassava28857.valid.m1
N
0.731
cassava28858.valid.m1
Manihot esculenta
cassava28858.valid.m1
N
0.731
Bm1_13920
Brugia malayi
Bm1_13920
N
0.731
RGD1564243
Rattus norvegicus
ENSRNOG00000015276
N
0.731
ANIA_06922
Aspergillus nidulans
CADANIAG00007728
N
0.731
ATEG_06133
Aspergillus terreus
CADATEAG00002525
N
0.731
ENSOCUG00000011909
Oryctolagus cuniculus
ENSOCUG00000011909
N
0.731
ACLA_016930
Aspergillus clavatus
CADACLAG00000891
N
0.731
WUBG_13399
Wuchereria bancrofti
WUBG_13399
N
0.731
ZC3H15
Dasypus novemcinctus
ENSDNOG00000018840
N
0.731
CPAG_03559
Candida parapsilosis
CPAG_03559
N
0.731
LOAG_00784
Loa loa
LOAG_00784
N
0.731
ppa007903m
Prunus persica
ppa007903m
N
0.731