fgenesh1_pg.C_scaffold_178000001 (Capitella teleta)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		fgenesh1_pg.C_scaffold_178000001 T07556_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZCRB1
M085_0.6 		Homo sapiens GRHUUAA RNAcompete
Ray et al.(2013)
RNCMPT00087 		0.742
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_178000001 RRM 12 82
fgenesh1_pg.C_scaffold_178000001 CCHC ZF 105 122

Links

Other CCHC ZF,RRM family RBPs
Other Capitella teleta RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF5 Homo sapiens ENSG00000100650 D 0.000
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.000
SRSF5 Pteropus vampyrus ENSPVAG00000009828 I 0.000
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.000
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.000
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.000
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.000
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.000
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.000
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.000
SRSF5 Sorex araneus ENSSARG00000001059 I 0.000
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.000
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.000
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.000
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.000
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.000
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.000
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.000
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.000
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.000
Srsf5 Mus musculus ENSMUSG00000021134 I 0.000
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.000
LOC100053264 Equus caballus ENSECAG00000026873 I 0.000
Srsf5 Dipodomys ordii ENSDORG00000003989 I 0.000
srsf5b Danio rerio ENSDARG00000027734 I 0.000
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.000
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.000
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.000
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.000
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.000
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.000
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.000
SRSF5 Felis catus ENSFCAG00000008848 I 0.000
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.000
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.000
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.000
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.000
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.000
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.000
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.000
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.000
SRSF5 Macropus eugenii ENSMEUG00000001521 N 0.000
AAH70967 Xenopus laevis AAH70967 N 0.000