CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os07g11800
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os07g11800
T11741_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os07g11800.1
CCHC ZF
310
327
VVCFNCGDPGHYTDKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
243 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Celf4
Mus musculus
ENSMUSG00000024268
I
0.000
Celf6
Mus musculus
ENSMUSG00000032297
I
0.000
fgenesh2_pg.C_sca_131000025
Lottia gigantea
fgenesh2_pg.C_sca_131000025
N
0.000
TNRC4
Taeniopygia guttata
ENSTGUG00000001647
N
0.000
LOAG_12531
Loa loa
LOAG_12531
N
0.000
ENSGALG00000018499
Gallus gallus
ENSGALG00000018499
N
0.000
Celf4
Dipodomys ordii
ENSDORG00000007169
N
0.000
zgc:165603
Danio rerio
ENSDARG00000078665
N
0.000
ENSACAG00000010826
Anolis carolinensis
ENSACAG00000010826
N
0.000
ACH69786
Xenopus laevis
ACH69786
N
0.000