CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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zgc:165603
(
Danio rerio
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDARG00000078665
T36252_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000096255
RRM
84
154
LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNALHEQKTLPGVRL
Links
Other
RRM
family RBPs
Other
Danio rerio
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACH69786
Xenopus laevis
ACH69786
N
0.915
Celf4
Mus musculus
ENSMUSG00000024268
I
0.873
Celf4
Dipodomys ordii
ENSDORG00000007169
N
0.859
ENSACAG00000010826
Anolis carolinensis
ENSACAG00000010826
N
0.859
TNRC4
Taeniopygia guttata
ENSTGUG00000001647
N
0.859
ENSGALG00000018499
Gallus gallus
ENSGALG00000018499
N
0.859
fgenesh2_pg.C_sca_131000025
Lottia gigantea
fgenesh2_pg.C_sca_131000025
N
0.806
Celf6
Mus musculus
ENSMUSG00000032297
I
0.778
CJA22675
Caenorhabditis japonica
CJA22675
N
0.732
LOAG_12531
Loa loa
LOAG_12531
N
0.732
63157
Helobdella robusta
63157
N
0.718