Celf6 (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000032297 T39318_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.986
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.843
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.829
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.749
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000034840 RRM 48 117
ENSMUSP00000034840 RRM 136 204
ENSMUSP00000034840 RRM 377 447
ENSMUSP00000112403 RRM 21 89
ENSMUSP00000112403 RRM 261 331
ENSMUSP00000112755 RRM 48 117
ENSMUSP00000112755 RRM 136 204
ENSMUSP00000112755 RRM 398 468
ENSMUSP00000113196 RRM 21 89
ENSMUSP00000113196 RRM 262 332
ENSMUSP00000118556 RRM 48 117
ENSMUSP00000118556 RRM 136 177
ENSMUSP00000122167 RRM 48 119

Links

Other RRM family RBPs
Other Mus musculus RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 1.000
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.990
HEXA Macaca mulatta ENSMMUG00000010687 I 0.990
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.986
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.986
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.986
CELF6 Sus scrofa ENSSSCG00000001928 I 0.986
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.986
CELF6 Bos taurus ENSBTAG00000014092 I 0.986
CELF6 Felis catus ENSFCAG00000016249 I 0.986
BRUNOL6 Homo sapiens ENSG00000140488 D 0.986
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.981
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.979
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.972
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.895
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.867
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.864
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.857
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.857
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.857
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.857
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.852
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.852
CELF6 Oryzias latipes ENSORLG00000013392 I 0.850
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.848
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.848
Celf4 Mus musculus ENSMUSG00000024268 I 0.848
BRUNOL5 Homo sapiens ENSG00000161082 D 0.843
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.839
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.838
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.838
GH14684 Drosophila grimshawi FBgn0122160 I 0.836
GK17101 Drosophila willistoni FBgn0219100 I 0.836
GJ13842 Drosophila virilis FBgn0201061 I 0.836
GI13095 Drosophila mojavensis FBgn0135852 I 0.836
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.836
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.836
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.836
ENSGALG00000018499 Gallus gallus ENSGALG00000018499 N 0.833
CELF4 Oryzias latipes ENSORLG00000008913 I 0.833
ENSACAG00000010826 Anolis carolinensis ENSACAG00000010826 N 0.833
TNRC4 Taeniopygia guttata ENSTGUG00000001647 N 0.833
Celf4 Dipodomys ordii ENSDORG00000007169 N 0.833
Q91579 Xenopus laevis Q91579 I 0.829
PHUM315130 Pediculus humanus PHUM315130 I 0.829
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.829
AAH72134 Xenopus laevis AAH72134 I 0.829
bru-3 Drosophila melanogaster FBgn0262350 D 0.829
AAA81375 Xenopus laevis AAA81375 I 0.829
ACH69785 Xenopus laevis ACH69785 I 0.829
AAH57704 Xenopus laevis AAH57704 I 0.829
GD12651 Drosophila simulans FBgn0184378 I 0.829
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.829
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.829
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.829
GM24582 Drosophila sechellia FBgn0179445 I 0.829
GF10965 Drosophila ananassae FBgn0088005 I 0.829
GE20053 Drosophila yakuba FBgn0237378 I 0.829
GG13757 Drosophila erecta FBgn0106020 I 0.829
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.824
CELF3 Canis familiaris ENSCAFG00000012794 I 0.824
CELF3 Equus caballus ENSECAG00000020365 I 0.824
CELF3 Homo sapiens ENSG00000159409 I 0.824
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.824
Celf3 Mus musculus ENSMUSG00000028137 I 0.824
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.824
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.824
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.824
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.824
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.824
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.824
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.824
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.821
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.821
ACH69786 Xenopus laevis ACH69786 N 0.819
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.819
AAH46942 Xenopus laevis AAH46942 I 0.819
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.819
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.819
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.819
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.819
CELF6 Canis familiaris ENSCAFG00000017695 N 0.816
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.816
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.814
Smp_041280 Schistosoma mansoni Smp_041280 I 0.814
celf5 Danio rerio ENSDARG00000071375 I 0.814
CELF5 Oryzias latipes ENSORLG00000004600 I 0.814
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.814
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.814
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.814
AAEL014033 Aedes aegypti AAEL014033 I 0.814
AGAP004950 Anopheles gambiae AGAP004950 I 0.814
CELF4 Procavia capensis ENSPCAG00000000126 N 0.812
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.810
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.807
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.807
GL21647 Drosophila persimilis FBgn0159240 I 0.807
CELF3 Sus scrofa ENSSSCG00000006618 I 0.805
celf3 Danio rerio ENSDARG00000034668 I 0.805
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.800
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.800
CELF3 Procavia capensis ENSPCAG00000001623 I 0.795
CELF3 Oryzias latipes ENSORLG00000010447 I 0.794
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.793
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.790
CELF3 Danio rerio ENSDARG00000006983 I 0.786
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.779
zgc:165603 Danio rerio ENSDARG00000078665 N 0.778
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.773
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.758
Smp_131780 Schistosoma mansoni Smp_131780 I 0.757
Bm1_27610 Brugia malayi Bm1_27610 I 0.757
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.754
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.754
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.754
BRUNOL4 Homo sapiens ENSG00000101489 D 0.754
ACH69784 Xenopus laevis ACH69784 I 0.754
fgenesh2_pg.C_sca_131000025 Lottia gigantea fgenesh2_pg.C_sca_131000025 N 0.750
LOAG_05508 Loa loa LOAG_05508 I 0.750
62054 Helobdella robusta 62054 I 0.750
63157 Helobdella robusta 63157 N 0.750
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.749
CJA07020 Caenorhabditis japonica CJA07020 I 0.736
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.736
CRE09771 Caenorhabditis remanei CRE09771 I 0.735
CBG15358 Caenorhabditis briggsae CBG15358 I 0.735
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.733
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.729
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.729
unc-75 Caenorhabditis elegans C17D12.2 D 0.725
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.725
90208 Helobdella robusta 90208 I 0.716
LOAG_12531 Loa loa LOAG_12531 N 0.708
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.708
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.708
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.708
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.706
CPIJ016329 Culex quinquefasciatus CPIJ016329 I 0.700
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.700
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.700
CpipJ_CPIJ016329 Culex pipiens CpipJ_CPIJ016329 I 0.700