Celf4 (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000024268 T39267_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.995
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.867
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.843
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.749
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000025117 RRM 56 125
ENSMUSP00000025117 RRM 153 221
ENSMUSP00000025117 RRM 422 471
ENSMUSP00000040517 RRM 56 124
ENSMUSP00000077680 RRM 56 125
ENSMUSP00000077680 RRM 154 222
ENSMUSP00000077680 RRM 407 443
ENSMUSP00000111482 RRM 11 79
ENSMUSP00000111482 RRM 279 329
ENSMUSP00000111483 RRM 56 125
ENSMUSP00000111483 RRM 153 221
ENSMUSP00000111483 RRM 421 491

Links

Other RRM family RBPs
Other Mus musculus RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 1.000
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 1.000
BRUNOL4 Homo sapiens ENSG00000101489 D 1.000
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.995
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.995
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.995
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.995
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.990
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.989
ACH69784 Xenopus laevis ACH69784 I 0.989
TNRC4 Taeniopygia guttata ENSTGUG00000001647 N 0.986
ENSACAG00000010826 Anolis carolinensis ENSACAG00000010826 N 0.986
ENSGALG00000018499 Gallus gallus ENSGALG00000018499 N 0.986
CELF4 Tupaia belangeri ENSTBEG00000010647 I 0.983
Celf4 Dipodomys ordii ENSDORG00000007169 N 0.971
CELF4 Monodelphis domestica ENSMODG00000000306 N 0.950
CELF4 Oryzias latipes ENSORLG00000008913 I 0.948
CELF4 Sus scrofa ENSSSCG00000003748 N 0.942
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.931
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.924
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.914
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.895
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.892
celf5 Danio rerio ENSDARG00000071375 I 0.886
ACH69786 Xenopus laevis ACH69786 N 0.884
CELF5 Oryzias latipes ENSORLG00000004600 I 0.881
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.876
zgc:165603 Danio rerio ENSDARG00000078665 N 0.873
BRUNOL5 Homo sapiens ENSG00000161082 D 0.867
ENSCAFG00000017759 Canis familiaris ENSCAFG00000017759 N 0.867
ACH69785 Xenopus laevis ACH69785 I 0.867
A6H776_BOVIN Bos taurus ENSBTAG00000004940 I 0.862
AAA81375 Xenopus laevis AAA81375 I 0.862
AAH57704 Xenopus laevis AAH57704 I 0.862
Q91579 Xenopus laevis Q91579 I 0.862
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.862
AAH72134 Xenopus laevis AAH72134 I 0.862
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.862
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.860
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.857
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.857
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.857
AAH46942 Xenopus laevis AAH46942 I 0.857
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.857
celf3 Danio rerio ENSDARG00000034668 I 0.852
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.848
Celf6 Mus musculus ENSMUSG00000032297 I 0.848
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.848
CELF6 Felis catus ENSFCAG00000016249 I 0.843
HEXA Macaca mulatta ENSMMUG00000010687 I 0.843
CELF6 Bos taurus ENSBTAG00000014092 I 0.843
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.843
BRUNOL6 Homo sapiens ENSG00000140488 D 0.843
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.843
CELF6 Sus scrofa ENSSSCG00000001928 I 0.843
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.843
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.843
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.843
CELF4 Macaca mulatta ENSMMUG00000006866 I 0.842
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.839
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.838
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.838
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.829
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.825
CELF4 Tetraodon nigroviridis ENSTNIG00000010679 I 0.825
CELF3 Danio rerio ENSDARG00000006983 I 0.819
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.817
CELF3 Oryzias latipes ENSORLG00000010447 I 0.812
ENSDARG00000076682 Danio rerio ENSDARG00000076682 I 0.806
fgenesh2_pg.C_sca_131000025 Lottia gigantea fgenesh2_pg.C_sca_131000025 N 0.806
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.805
CELF3 Equus caballus ENSECAG00000020365 I 0.805
CELF3 Homo sapiens ENSG00000159409 I 0.805
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.805
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.805
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.805
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.805
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.805
Celf3 Mus musculus ENSMUSG00000028137 I 0.805
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.805
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.805
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.805
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.805
CELF3 Canis familiaris ENSCAFG00000012794 I 0.805
CELF3 Sus scrofa ENSSSCG00000006618 I 0.790
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.787
Bm1_27610 Brugia malayi Bm1_27610 I 0.786
63157 Helobdella robusta 63157 N 0.783
CELF3 Procavia capensis ENSPCAG00000001623 I 0.781
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.776
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.771
CRE09771 Caenorhabditis remanei CRE09771 I 0.763
CBG15358 Caenorhabditis briggsae CBG15358 I 0.763
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.754
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.752
celf4 Danio rerio ENSDARG00000070045 I 0.752
unc-75 Caenorhabditis elegans C17D12.2 D 0.749
CELF4 Otolemur garnettii ENSOGAG00000010018 I 0.742
LOAG_12531 Loa loa LOAG_12531 N 0.739
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.736
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.736
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.730
CELF3 Oryzias latipes ENSORLG00000002630 I 0.725
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.724
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.724
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.720
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.719
CELF5 Canis familiaris ENSCAFG00000019263 I 0.710
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.705
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.705
CJA22675 Caenorhabditis japonica CJA22675 N 0.704
CELF5 Sus scrofa ENSSSCG00000013476 I 0.701