CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os07g15080
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os07g15080
T11752_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os07g15080.1
CCHC ZF
680
697
VDCFNCGEYGHYANNCPH
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
56 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABG_04907
Paracoccidioides brasiliensis
PABG_04907
N
0.000
PABG_07621
Paracoccidioides brasiliensis
PABG_07621
N
0.000
PABG_07827
Paracoccidioides brasiliensis
PABG_07827
N
0.000
PITG_22277
Phytophthora infestans
PITG_22277
N
0.000
PTTG_00731
Puccinia triticina
PTTG_00731
N
0.000
PTTG_06543
Puccinia triticina
PTTG_06543
N
0.000
nasonia_NCBI_hmm141244
Nasonia vitripennis
nasonia_NCBI_hmm141244
N
0.000
TcIL3000.0.47130
Trypanosoma congolense
TcIL3000.0.47130
N
0.000
TcIL3000.0.60500
Trypanosoma congolense
TcIL3000.0.60500
N
0.000