CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os07g22060
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os07g22060
T11806_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os07g22060.1
CCHC ZF
493
510
GVCFNCGDPGHYADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
630 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SRSF11
Anolis carolinensis
ENSACAG00000013654
N
0.000
SREK1
Dasypus novemcinctus
ENSDNOG00000010327
N
0.000
SREK1
Felis catus
ENSFCAG00000015559
N
0.000
SRSF11
Gasterosteus aculeatus
ENSGACG00000009346
N
0.000
ENSPPYG00000015515
Pongo pygmaeus
ENSPPYG00000015515
N
0.000
SRSF11
Tetraodon nigroviridis
ENSTNIG00000010494
N
0.000
SRSF11
Takifugu rubripes
ENSTRUG00000017369
N
0.000
sfrs12
Xenopus tropicalis
ENSXETG00000021460
N
0.000