CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOAG_08235
(
Loa loa
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
LOAG_08235
T16668_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOAG_08235T0
CSD
75
146
GVKGRVKWYSVRFHYGFIARDDKGNDVFVHQTAITKSRIIKYYLRTLGDGEEVLFDIVEGKQGPEAANVTGP
Links
Other
CSD
family RBPs
Other
Loa loa
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Bm1_03385
Brugia malayi
Bm1_03385
N
0.932
CBG02238
Caenorhabditis briggsae
CBG02238
N
0.712
CBN10862
Caenorhabditis brenneri
CBN10862
N
0.712
CBN20898
Caenorhabditis brenneri
CBN20898
N
0.726
CBN22260
Caenorhabditis brenneri
CBN22260
N
0.726
CRE03839
Caenorhabditis remanei
CRE03839
N
0.712
cey-2
Caenorhabditis elegans
F46F11.2
N
0.712
cey-4
Caenorhabditis elegans
Y39A1C.3
N
0.707