CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GE19874
(
Drosophila yakuba
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
FBgn0237204
T17106_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0264884
CSD
54
121
VVTGIVKSFSRTKGHGFITPHAGGEDVFCHVSDIEGEYVPMPGDEVKYRLCAIPPKYEKHQAVHVQIS
Links
Other
CSD
family RBPs
Other
Drosophila yakuba
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT1G60650
Arabidopsis thaliana
AT1G60650-TAIR-G
N
0.000
MDP0000272138
Malus x domestica
MDP0000272138
N
0.000
MDP0000088428
Malus x domestica
MDP0000088428
N
0.000
mgf007889m
Mimulus guttatus
mgf007889m
N
0.000
Glyma20g24730.1
Glycine max
Glyma20g24730.1
N
0.000
Glyma10g42320.1
Glycine max
Glyma10g42320.1
N
0.000
Cucsa.317370
Cucumis sativus
Cucsa.317370
N
0.000
Cucsa.308610
Cucumis sativus
Cucsa.308610
N
0.000
cassava30312.valid.m1
Manihot esculenta
cassava30312.valid.m1
N
0.000
cassava30311.valid.m1
Manihot esculenta
cassava30311.valid.m1
N
0.000
28462.m000127
Ricinus communis
28462.m000127
N
0.000
GSVIVG00033666001
Vitis vinifera
GSVIVG00033666001
N
0.000
XM_002871038.1
Arabidopsis lyrata
fgenesh2_kg.6__343__AT5G04280.1
N
0.000
XM_002888081.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000318
N
0.000
AT5G04280
Arabidopsis thaliana
AT5G04280-TAIR-G
N
0.000
ppa009799m
Prunus persica
ppa009799m
N
0.000