XM_002871038.1 (Arabidopsis lyrata)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		fgenesh2_kg.6__343__AT5G04280.1 T07378_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__343__AT5G04280.1 RRM 9 79
fgenesh2_kg.6__343__AT5G04280.1 CCHC ZF 124 141

Links

Other CCHC ZF,RRM family RBPs
Other Arabidopsis lyrata RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT5G04280 Arabidopsis thaliana AT5G04280-TAIR-G N 0.989
cassava30312.valid.m1 Manihot esculenta cassava30312.valid.m1 N 0.831
cassava30311.valid.m1 Manihot esculenta cassava30311.valid.m1 N 0.831
28462.m000127 Ricinus communis 28462.m000127 N 0.798
mgf007889m Mimulus guttatus mgf007889m N 0.798
Glyma20g24730.1 Glycine max Glyma20g24730.1 N 0.775
ppa009799m Prunus persica ppa009799m N 0.764
Cucsa.308610 Cucumis sativus Cucsa.308610 N 0.764
Glyma10g42320.1 Glycine max Glyma10g42320.1 N 0.764
MDP0000272138 Malus x domestica MDP0000272138 N 0.764
MDP0000088428 Malus x domestica MDP0000088428 N 0.764
Cucsa.317370 Cucumis sativus Cucsa.317370 N 0.764
XM_002888081.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000318 N 0.730
GSVIVG00033666001 Vitis vinifera GSVIVG00033666001 N 0.719
AT1G60650 Arabidopsis thaliana AT1G60650-TAIR-G N 0.708