cassava30312.valid.m1 (Manihot esculenta)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		cassava30312.valid.m1 T07508_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava30312.valid.m1 RRM 9 79
cassava30312.valid.m1 CCHC ZF 119 136

Links

Other CCHC ZF,RRM family RBPs
Other Manihot esculenta RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava30311.valid.m1 Manihot esculenta cassava30311.valid.m1 N 1.000
28462.m000127 Ricinus communis 28462.m000127 N 0.944
mgf007889m Mimulus guttatus mgf007889m N 0.876
Cucsa.308610 Cucumis sativus Cucsa.308610 N 0.865
Glyma10g42320.1 Glycine max Glyma10g42320.1 N 0.854
Glyma20g24730.1 Glycine max Glyma20g24730.1 N 0.843
ppa009799m Prunus persica ppa009799m N 0.843
MDP0000088428 Malus x domestica MDP0000088428 N 0.831
XM_002871038.1 Arabidopsis lyrata fgenesh2_kg.6__343__AT5G04280.1 N 0.831
MDP0000272138 Malus x domestica MDP0000272138 N 0.831
Cucsa.317370 Cucumis sativus Cucsa.317370 N 0.831
AT5G04280 Arabidopsis thaliana AT5G04280-TAIR-G N 0.820
AT1G60650 Arabidopsis thaliana AT1G60650-TAIR-G N 0.809
XM_002888081.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000318 N 0.809
GSVIVG00033666001 Vitis vinifera GSVIVG00033666001 N 0.798
BGIOSIBCE023961 Oryza indica BGIOSIBCE023961 N 0.708
LOC_Os07g08960 Oryza sativa LOC_Os07g08960 N 0.708