Cucsa.308610 (Cucumis sativus)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		Cucsa.308610 T07519_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.308610.1 RRM 9 79
Cucsa.308610.1 CCHC ZF 121 138
Cucsa.308610.2 RRM 1 41
Cucsa.308610.2 CCHC ZF 83 100
Cucsa.308610.3 RRM 1 41
Cucsa.308610.3 CCHC ZF 83 100

Links

Other CCHC ZF,RRM family RBPs
Other Cucumis sativus RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava30311.valid.m1 Manihot esculenta cassava30311.valid.m1 N 0.865
Cucsa.317370 Cucumis sativus Cucsa.317370 N 0.865
cassava30312.valid.m1 Manihot esculenta cassava30312.valid.m1 N 0.865
B9HUL0_POPTR Populus trichocarpa POPTR_0010s23550 N 0.847
POPTR_0008s03290 Populus trichocarpa POPTR_0008s03290 N 0.847
28462.m000127 Ricinus communis 28462.m000127 N 0.843
PK09039.1 Cannabis sativa PK09039.1 N 0.833
ppa009799m Prunus persica ppa009799m N 0.798
MDP0000088428 Malus x domestica MDP0000088428 N 0.787
Glyma10g42320.1 Glycine max Glyma10g42320.1 N 0.787
MDP0000272138 Malus x domestica MDP0000272138 N 0.787
mgf007889m Mimulus guttatus mgf007889m N 0.787
Glyma20g24730.1 Glycine max Glyma20g24730.1 N 0.775
XM_002871038.1 Arabidopsis lyrata fgenesh2_kg.6__343__AT5G04280.1 N 0.764
AT5G04280 Arabidopsis thaliana AT5G04280-TAIR-G N 0.753
XM_002888081.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000318 N 0.753
AT1G60650 Arabidopsis thaliana AT1G60650-TAIR-G N 0.742
GSVIVG00033666001 Vitis vinifera GSVIVG00033666001 N 0.708