KHSRP (Procavia capensis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSPCAG00000000246 T19302_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.844
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.844
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.844
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.844
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000000233 KH 183 208
ENSPCAP00000000233 KH 235 299
ENSPCAP00000000233 KH 324 386
ENSPCAP00000000233 KH 426 491

Links

Other KH family RBPs
Other Procavia capensis RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK04103.1 Cannabis sativa PK04103.1 N 0.000
Glyma01g10610.1 Glycine max Glyma01g10610.1 N 0.000
gw1.11.272.1 Selaginella moellendorfii gw1.11.272.1 N 0.000
mgf003951m Mimulus guttatus mgf003951m N 0.000
mgf004101m Mimulus guttatus mgf004101m N 0.000
mgf012162m Mimulus guttatus mgf012162m N 0.000
Medtr8g078060 Medicago truncatula Medtr8g078060 N 0.000
chr4.LjT10E08.110.nc Lotus japonicus chr4.LjT10E08.110.nc N 0.000
MDP0000209929 Malus x domestica MDP0000209929 N 0.000
MDP0000706016 Malus x domestica MDP0000706016 N 0.000
Cucsa.312990 Cucumis sativus Cucsa.312990 N 0.000
cassava5467.m1 Manihot esculenta cassava5467.m1 N 0.000
cassava25690.m1 Manihot esculenta cassava25690.m1 N 0.000
AT1G32360 Arabidopsis thaliana AT1G32360-TAIR-G N 0.000
BGIOSIBCE026569 Oryza indica BGIOSIBCE026569 N 0.000
BRADI3G16360 Brachypodium distachyon BRADI3G16360 N 0.000
BRADI3G16377 Brachypodium distachyon BRADI3G16377 N 0.000
GSVIVG00013136001 Vitis vinifera GSVIVG00013136001 N 0.000
LOC_Os08g06330 Oryza sativa LOC_Os08g06330 N 0.000
B9MU37_POPTR Populus trichocarpa POPTR_0001s02330 N 0.000
XM_002890939.1 Arabidopsis lyrata scaffold_103602.1 N 0.000
30054.m000804 Ricinus communis 30054.m000804 N 0.000
ppa008182m Prunus persica ppa008182m N 0.000