KHDRBS1 (Tetraodon nigroviridis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTNIG00000017471 T19623_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHDRBS1
M160_0.6 		Homo sapiens AUAAAAV RNAcompete
Ray et al.(2013)
RNCMPT00169 		0.812
Khdrbs1
M060_0.6 		Mus musculus UAAAAVV RNAcompete
Ray et al.(2013)
RNCMPT00062 		0.812
KHDRBS2
M176_0.6 		Homo sapiens RAUAAAM RNAcompete
Ray et al.(2013)
RNCMPT00185 		0.783
KHDRBS3
M033_0.6 		Homo sapiens AUAAAV RNAcompete
Ray et al.(2013)
RNCMPT00034 		0.702
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000020615 KH 68 150

Links

Other KH family RBPs
Other Tetraodon nigroviridis RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHDRBS3 Homo sapiens ENSG00000131773 D 0.702
KHDRBS2 Homo sapiens ENSG00000112232 D 0.783
Khdrbs1 Mus musculus ENSMUSG00000028790 D 0.812
KHDRBS1 Homo sapiens ENSG00000121774 D 0.812
KHDRBS1 Oryzias latipes ENSORLG00000017156 I 0.940
KHDRBS1 Oryzias latipes ENSORLG00000020884 I 0.819
KHDRBS1 Procavia capensis ENSPCAG00000009844 I 0.812
ENSPPYG00000001605 Pongo pygmaeus ENSPPYG00000001605 I 0.812
KHDRBS1 Pan troglodytes ENSPTRG00000000469 I 0.812
XM_001365874.1 Monodelphis domestica ENSMODG00000017551 I 0.812
KHDRBS2 Pan troglodytes ENSPTRG00000018311 I 0.783
Q6J4Q9_PANTR Pan troglodytes ENSPTRG00000020608 I 0.702
KHDRBS2 Oryzias latipes ENSORLG00000010165 I 0.747
KHDRBS1 Ochotona princeps ENSOPRG00000005131 I 0.812
KHDRBS2 Monodelphis domestica ENSMODG00000018714 I 0.783
Khdrbs3 Mus musculus ENSMUSG00000022332 I 0.702
Khdrbs2 Mus musculus ENSMUSG00000026058 I 0.783
KHDRBS1 Ornithorhynchus anatinus ENSOANG00000012357 I 0.812
KHDRBS3 Ornithorhynchus anatinus ENSOANG00000014074 I 0.702
KHDRBS3 Oryctolagus cuniculus ENSOCUG00000000743 I 0.702
KHDRBS1 Oryctolagus cuniculus ENSOCUG00000007654 I 0.812
KHDRBS2 Oryctolagus cuniculus ENSOCUG00000012344 I 0.783
KHDRBS3 Otolemur garnettii ENSOGAG00000005150 I 0.702
KHDRBS3 Ochotona princeps ENSOPRG00000000404 I 0.702
KHDRBS1 Pteropus vampyrus ENSPVAG00000013289 I 0.812
Khdrbs2 Rattus norvegicus ENSRNOG00000012284 I 0.783
KHDRBS2 Takifugu rubripes ENSTRUG00000015760 I 0.759
KHDRBS1 Tarsius syrichta ENSTSYG00000004921 I 0.812
KHDRBS2 Tarsius syrichta ENSTSYG00000007203 I 0.783
KHDRBS3 Tursiops truncatus ENSTTRG00000001270 I 0.702
KHDRBS2 Tursiops truncatus ENSTTRG00000005591 I 0.783
KHDRBS1 Tursiops truncatus ENSTTRG00000009637 I 0.812
KHDRBS2 Vicugna pacos ENSVPAG00000001469 I 0.771
KHDRBS1 Vicugna pacos ENSVPAG00000006966 I 0.812
khdrbs1 Xenopus tropicalis ENSXETG00000005246 I 0.776
Ame_R010128 Ailuropoda melanoleuca Ame_R010128 I 0.812
KHDRBS1 Takifugu rubripes ENSTRUG00000012039 I 0.988
KHDRBS1 Takifugu rubripes ENSTRUG00000010001 I 0.819
KHDRBS1 Tetraodon nigroviridis ENSTNIG00000013071 I 0.819
KHDRBS1 Sorex araneus ENSSARG00000008479 I 0.798
KHDRBS2 Sus scrofa ENSSSCG00000001490 I 0.783
KHDRBS3 Sus scrofa ENSSSCG00000005941 I 0.702
KHDRBS3 Spermophilus tridecemlineatus ENSSTOG00000008710 I 0.702
KHDRBS1 Spermophilus tridecemlineatus ENSSTOG00000014138 I 0.812
KHDRBS3 Tupaia belangeri ENSTBEG00000004773 I 0.702
KHDRBS1 Tupaia belangeri ENSTBEG00000016857 I 0.812
KHDRBS3 Taeniopygia guttata ENSTGUG00000012611 I 0.702
KHDRBS2 Taeniopygia guttata ENSTGUG00000012786 I 0.783
KHDRBS1 Taeniopygia guttata ENSTGUG00000017346 I 0.833
Ame_R010681 Ailuropoda melanoleuca Ame_R010681 I 0.702
KHDRBS2 Anolis carolinensis ENSACAG00000006691 I 0.783
KHDRBS3 Cavia porcellus ENSCPOG00000000342 I 0.702
KHDRBS1 Cavia porcellus ENSCPOG00000024148 I 0.812
KHDRBS2 Cavia porcellus ENSCPOG00000025621 I 0.783
khdrbs1a Danio rerio ENSDARG00000052856 I 0.843
khdrbs2 Danio rerio ENSDARG00000069469 I 0.759
khdrbs1b Danio rerio ENSDARG00000070475 I 0.807
ENSDARG00000078082 Danio rerio ENSDARG00000078082 I 0.807
KHDRBS2 Dasypus novemcinctus ENSDNOG00000014028 I 0.783
Khdrbs2 Dipodomys ordii ENSDORG00000005701 I 0.783
LOC100414412 Callithrix jacchus ENSCJAG00000006580 I 0.812
LOC100399263 Callithrix jacchus ENSCJAG00000004331 I 0.702
LOC100395662 Callithrix jacchus ENSCJAG00000001766 I 0.783
KHDRBS1 Anolis carolinensis ENSACAG00000011693 I 0.824
KHDRBS3 Anolis carolinensis ENSACAG00000012042 I 0.702
A4FV24_BOVIN Bos taurus ENSBTAG00000002181 I 0.702
Q29RQ2_BOVIN Bos taurus ENSBTAG00000012497 I 0.812
KHDRBS2 Bos taurus ENSBTAG00000043990 I 0.783
KHDRBS3 Canis familiaris ENSCAFG00000001166 I 0.702
KHDRBS2 Canis familiaris ENSCAFG00000002470 I 0.783
KHDRBS1 Canis familiaris ENSCAFG00000010777 I 0.812
ENSCHOG00000006973 Choloepus hoffmanni ENSCHOG00000006973 I 0.812
LOC100058116 Equus caballus ENSECAG00000010194 I 0.702
KHDRBS1 Equus caballus ENSECAG00000019346 I 0.812
LOC100056966 Equus caballus ENSECAG00000021541 I 0.783
KHDRBS3 Loxodonta africana ENSLAFG00000004849 I 0.702
KHDRBS2 Loxodonta africana ENSLAFG00000006655 I 0.783
KHDRBS1 Loxodonta africana ENSLAFG00000009414 I 0.812
KHDRBS1 Meleagris gallopavo ENSMGAG00000004455 I 0.812
KHDRBS3 Meleagris gallopavo ENSMGAG00000012888 I 0.702
KHDRBS2 Meleagris gallopavo ENSMGAG00000013877 I 0.783
KHDRBS2 Macaca mulatta ENSMMUG00000003329 I 0.783
Q6J4Q6_MACMU Macaca mulatta ENSMMUG00000022248 I 0.702
KHDRBS1 Macaca mulatta ENSMMUG00000023438 I 0.812
KHDRBS2 Gorilla gorilla ENSGGOG00000025068 I 0.783
KHDRBS1 Gorilla gorilla ENSGGOG00000008633 I 0.812
Q6J4Q8_9PRIM Gorilla gorilla ENSGGOG00000000940 I 0.702
KHDRBS2 Erinaceus europaeus ENSEEUG00000003986 I 0.783
KHDRBS3 Echinops telfairi ENSETEG00000004701 I 0.702
KHDRBS1 Felis catus ENSFCAG00000006511 I 0.812
KHDRBS2 Gasterosteus aculeatus ENSGACG00000006097 I 0.747
KHDRBS3 Monodelphis domestica ENSMODG00000000975 I 0.702
KHDRBS1 Gasterosteus aculeatus ENSGACG00000009219 I 0.807
KHDR1_CHICK Gallus gallus ENSGALG00000003272 I 0.812
KHDRBS3 Gallus gallus ENSGALG00000016203 I 0.702
KHDRBS2 Gallus gallus ENSGALG00000016276 I 0.783
KHDRBS1 Gasterosteus aculeatus ENSGACG00000006577 N 0.711