CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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khdrbs1
(
Xenopus tropicalis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSXETG00000005246
T19752_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHDRBS1
M160_0.6
Homo sapiens
AUAAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00169
0.953
Khdrbs1
M060_0.6
Mus musculus
UAAAAVV
RNAcompete
Ray et al.(2013)
RNCMPT00062
0.953
KHDRBS2
M176_0.6
Homo sapiens
RAUAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00185
0.741
KHDRBS3
M033_0.6
Homo sapiens
AUAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00034
0.718
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000011457
KH
62
146
KERILIPVKLYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYSHLNMDLHVFIEVFGPPCESY
Links
Other
KH
family RBPs
Other
Xenopus tropicalis
RBPs
101 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Khdrbs1
Mus musculus
ENSMUSG00000028790
D
0.953
XM_001365874.1
Monodelphis domestica
ENSMODG00000017551
I
0.953
KHDRBS1
Ornithorhynchus anatinus
ENSOANG00000012357
I
0.953
KHDRBS1
Oryctolagus cuniculus
ENSOCUG00000007654
I
0.953
KHDRBS1
Cavia porcellus
ENSCPOG00000024148
I
0.953
KHDRBS1
Ochotona princeps
ENSOPRG00000005131
I
0.953
KHDRBS1
Macaca mulatta
ENSMMUG00000023438
I
0.953
Ame_R010128
Ailuropoda melanoleuca
Ame_R010128
I
0.953
KHDR1_CHICK
Gallus gallus
ENSGALG00000003272
I
0.953
KHDRBS1
Homo sapiens
ENSG00000121774
D
0.953
KHDRBS1
Equus caballus
ENSECAG00000019346
I
0.953
KHDRBS1
Gorilla gorilla
ENSGGOG00000008633
I
0.953
KHDRBS1
Meleagris gallopavo
ENSMGAG00000004455
I
0.953
KHDRBS1
Loxodonta africana
ENSLAFG00000009414
I
0.953
KHDRBS1
Procavia capensis
ENSPCAG00000009844
I
0.953
LOC100414412
Callithrix jacchus
ENSCJAG00000006580
I
0.953
Q29RQ2_BOVIN
Bos taurus
ENSBTAG00000012497
I
0.953
KHDRBS1
Tupaia belangeri
ENSTBEG00000016857
I
0.953
KHDRBS1
Tarsius syrichta
ENSTSYG00000004921
I
0.953
KHDRBS1
Tursiops truncatus
ENSTTRG00000009637
I
0.953
KHDRBS1
Vicugna pacos
ENSVPAG00000006966
I
0.953
KHDRBS1
Felis catus
ENSFCAG00000006511
I
0.953
KHDRBS1
Spermophilus tridecemlineatus
ENSSTOG00000014138
I
0.953
KHDRBS1
Pteropus vampyrus
ENSPVAG00000013289
I
0.953
ENSPPYG00000001605
Pongo pygmaeus
ENSPPYG00000001605
I
0.953
ENSCHOG00000006973
Choloepus hoffmanni
ENSCHOG00000006973
I
0.953
KHDRBS1
Pan troglodytes
ENSPTRG00000000469
I
0.953
KHDRBS1
Canis familiaris
ENSCAFG00000010777
I
0.953
KHDRBS1
Anolis carolinensis
ENSACAG00000011693
I
0.941
KHDRBS1
Taeniopygia guttata
ENSTGUG00000017346
I
0.929
KHDRBS1
Sorex araneus
ENSSARG00000008479
I
0.918
KHDRBS1
Microcebus murinus
ENSMICG00000001428
I
0.835
Khdrbs1
Dipodomys ordii
ENSDORG00000011530
I
0.824
KHDRBS1
Oryzias latipes
ENSORLG00000020884
I
0.824
KHDRBS1
Dasypus novemcinctus
ENSDNOG00000003761
I
0.824
khdrbs1a
Danio rerio
ENSDARG00000052856
I
0.812
KHDRBS1
Tetraodon nigroviridis
ENSTNIG00000013071
I
0.812
khdrbs1b
Danio rerio
ENSDARG00000070475
I
0.812
ENSDARG00000078082
Danio rerio
ENSDARG00000078082
I
0.812
KHDRBS1
Takifugu rubripes
ENSTRUG00000010001
I
0.812
KHDRBS1
Gasterosteus aculeatus
ENSGACG00000009219
I
0.812
ENSCJAG00000003689
Callithrix jacchus
ENSCJAG00000003689
I
0.800
KHDRBS1
Takifugu rubripes
ENSTRUG00000012039
I
0.788
KHDRBS1
Tetraodon nigroviridis
ENSTNIG00000017471
I
0.776
KHDRBS1
Oryzias latipes
ENSORLG00000017156
I
0.765
KHDRBS2
Canis familiaris
ENSCAFG00000002470
I
0.741
KHDRBS2
Tarsius syrichta
ENSTSYG00000007203
I
0.741
KHDRBS2
Taeniopygia guttata
ENSTGUG00000012786
I
0.741
KHDRBS2
Bos taurus
ENSBTAG00000043990
I
0.741
KHDRBS2
Homo sapiens
ENSG00000112232
D
0.741
KHDRBS2
Oryctolagus cuniculus
ENSOCUG00000012344
I
0.741
KHDRBS2
Erinaceus europaeus
ENSEEUG00000003986
I
0.741
KHDRBS2
Oryzias latipes
ENSORLG00000010165
I
0.741
KHDRBS2
Pan troglodytes
ENSPTRG00000018311
I
0.741
LOC100395662
Callithrix jacchus
ENSCJAG00000001766
I
0.741
LOC100056966
Equus caballus
ENSECAG00000021541
I
0.741
KHDRBS2
Gorilla gorilla
ENSGGOG00000025068
I
0.741
KHDRBS2
Anolis carolinensis
ENSACAG00000006691
I
0.741
KHDRBS2
Gallus gallus
ENSGALG00000016276
I
0.741
KHDRBS2
Loxodonta africana
ENSLAFG00000006655
I
0.741
Khdrbs2
Rattus norvegicus
ENSRNOG00000012284
I
0.741
KHDRBS2
Macaca mulatta
ENSMMUG00000003329
I
0.741
KHDRBS2
Sus scrofa
ENSSSCG00000001490
I
0.741
KHDRBS2
Meleagris gallopavo
ENSMGAG00000013877
I
0.741
KHDRBS2
Tursiops truncatus
ENSTTRG00000005591
I
0.741
KHDRBS2
Cavia porcellus
ENSCPOG00000025621
I
0.741
Khdrbs2
Mus musculus
ENSMUSG00000026058
I
0.729
Q6J4Q6_MACMU
Macaca mulatta
ENSMMUG00000022248
I
0.729
KHDRBS2
Dasypus novemcinctus
ENSDNOG00000014028
I
0.729
Khdrbs2
Dipodomys ordii
ENSDORG00000005701
I
0.729
KHDRBS2
Monodelphis domestica
ENSMODG00000018714
I
0.729
KHDRBS2
Vicugna pacos
ENSVPAG00000001469
I
0.729
khdrbs2
Danio rerio
ENSDARG00000069469
I
0.729
KHDRBS2
Takifugu rubripes
ENSTRUG00000015760
I
0.729
KHDRBS3
Anolis carolinensis
ENSACAG00000012042
I
0.718
KHDRBS3
Sus scrofa
ENSSSCG00000005941
I
0.718
KHDRBS3
Canis familiaris
ENSCAFG00000001166
I
0.718
A4FV24_BOVIN
Bos taurus
ENSBTAG00000002181
I
0.718
KHDRBS3
Tupaia belangeri
ENSTBEG00000004773
I
0.718
KHDRBS3
Tursiops truncatus
ENSTTRG00000001270
I
0.718
KHDRBS3
Loxodonta africana
ENSLAFG00000004849
I
0.718
KHDRBS3
Monodelphis domestica
ENSMODG00000000975
I
0.718
Q6J4Q8_9PRIM
Gorilla gorilla
ENSGGOG00000000940
I
0.718
Ame_R010681
Ailuropoda melanoleuca
Ame_R010681
I
0.718
KHDRBS3
Homo sapiens
ENSG00000131773
D
0.718
Khdrbs3
Mus musculus
ENSMUSG00000022332
I
0.718
KHDRBS3
Ornithorhynchus anatinus
ENSOANG00000014074
I
0.718
LOC100399263
Callithrix jacchus
ENSCJAG00000004331
I
0.718
Q6J4Q9_PANTR
Pan troglodytes
ENSPTRG00000020608
I
0.718
KHDRBS3
Cavia porcellus
ENSCPOG00000000342
I
0.718
KHDRBS3
Echinops telfairi
ENSETEG00000004701
I
0.718
KHDRBS3
Otolemur garnettii
ENSOGAG00000005150
I
0.718
KHDRBS3
Pteropus vampyrus
ENSPVAG00000017021
I
0.718
KHDRBS3
Ochotona princeps
ENSOPRG00000000404
I
0.706
KHDRBS3
Gallus gallus
ENSGALG00000016203
I
0.706
KHDRBS2
Gasterosteus aculeatus
ENSGACG00000006097
I
0.706
LOC100058116
Equus caballus
ENSECAG00000010194
I
0.706
KHDRBS3
Meleagris gallopavo
ENSMGAG00000012888
I
0.706
KHDRBS3
Spermophilus tridecemlineatus
ENSSTOG00000008710
I
0.706
KHDRBS3
Oryctolagus cuniculus
ENSOCUG00000000743
I
0.706
KHDRBS3
Taeniopygia guttata
ENSTGUG00000012611
I
0.706