CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Al_scaffold_0769_1
(
Arabidopsis lyrata
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
Al_scaffold_0769_1
T24009_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Al_scaffold_0769_1
PUF
108
142
KMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDALF
Al_scaffold_0769_1
PUF
144
175
ELQPQFLNLASNKYAVHFIQKMLDGASKQQLA
Links
Other
PUF
family RBPs
Other
Arabidopsis lyrata
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
0.000
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.000
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.000
PABPC4
Pteropus vampyrus
ENSPVAG00000002187
N
0.000
ENSMGAG00000012239
Meleagris gallopavo
ENSMGAG00000012239
N
0.000
ENSMGAG00000005408
Meleagris gallopavo
ENSMGAG00000005408
N
0.000
PABPC4
Choloepus hoffmanni
ENSCHOG00000005327
N
0.000
Q5ZL53_CHICK
Gallus gallus
ENSGALG00000014450
N
0.000
PABPC4
Felis catus
ENSFCAG00000015254
N
0.000
ENSEEUG00000002701
Erinaceus europaeus
ENSEEUG00000002701
N
0.000
Pabpc1
Dipodomys ordii
ENSDORG00000013935
N
0.000
ENSDNOG00000008718
Dasypus novemcinctus
ENSDNOG00000008718
N
0.000
ENSCPOG00000012917
Cavia porcellus
ENSCPOG00000012917
N
0.000
ENSVPAG00000003865
Vicugna pacos
ENSVPAG00000003865
N
0.000