ENSCING00000003888 (Ciona intestinalis)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSCING00000003888 T24167_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.764
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.764
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.745
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.745
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.745
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.745
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.745
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.716
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.716
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.716
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.716
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.716
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.716
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000008033 PUF 689 723
ENSCINP00000008033 PUF 725 755
ENSCINP00000008033 PUF 762 795
ENSCINP00000008033 PUF 797 831
ENSCINP00000008033 PUF 833 867
ENSCINP00000008033 PUF 869 903
ENSCINP00000008033 PUF 905 936
ENSCINP00000008033 PUF 949 978

Links

Other PUF family RBPs
Other Ciona intestinalis RBPs

87 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSACAG00000017733 Anolis carolinensis ENSACAG00000017733 N 0.000
CPSF7 Monodelphis domestica ENSMODG00000020364 N 0.000
Cpsf7 Mus musculus ENSMUSG00000034820 N 0.000
CPSF7 Oryctolagus cuniculus ENSOCUG00000024726 N 0.000
CPSF7 Ochotona princeps ENSOPRG00000008353 N 0.000
CPSF7 Procavia capensis ENSPCAG00000009725 N 0.000
ENSPPYG00000003188 Pongo pygmaeus ENSPPYG00000003188 N 0.000
CPSF7 Pan troglodytes ENSPTRG00000003742 N 0.000
CPSF7 Pteropus vampyrus ENSPVAG00000010675 N 0.000
CPSF7_RAT Rattus norvegicus ENSRNOG00000020668 N 0.000
CPSF7 Sus scrofa ENSSSCG00000013083 N 0.000
CPSF7 Tupaia belangeri ENSTBEG00000006496 N 0.000
CPSF7 Taeniopygia guttata ENSTGUG00000006513 N 0.000
CPSF7 Tursiops truncatus ENSTTRG00000011085 N 0.000
CPSF7 Myotis lucifugus ENSMLUG00000013278 N 0.000
CPSF7 Microcebus murinus ENSMICG00000013788 N 0.000
CPSF7 Meleagris gallopavo ENSMGAG00000004876 N 0.000
Q3T0B3_BOVIN Bos taurus ENSBTAG00000015263 N 0.000
CPSF7 Canis familiaris ENSCAFG00000016152 N 0.000
LOC100387773 Callithrix jacchus ENSCJAG00000019282 N 0.000
CPSF7 Cavia porcellus ENSCPOG00000009980 N 0.000
CPSF7 Dasypus novemcinctus ENSDNOG00000018517 N 0.000
LOC100059747 Equus caballus ENSECAG00000018521 N 0.000
CPSF7 Erinaceus europaeus ENSEEUG00000005966 N 0.000
CPSF7 Echinops telfairi ENSETEG00000003765 N 0.000
CPSF7 Felis catus ENSFCAG00000013677 N 0.000
CPSF7 Homo sapiens ENSG00000149532 N 0.000
CPSF7 Gallus gallus ENSGALG00000013298 N 0.000
CPSF7 Loxodonta africana ENSLAFG00000032084 N 0.000
CPSF7 Macropus eugenii ENSMEUG00000002261 N 0.000
Ame_R014834 Ailuropoda melanoleuca Ame_R014834 N 0.000