ENSCING00000003888 (Ciona intestinalis)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSCING00000003888 T24167_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.764
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.764
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.745
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.745
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.745
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.745
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.745
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.716
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.716
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.716
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.716
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.716
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.716
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000008033 PUF 689 723
ENSCINP00000008033 PUF 725 755
ENSCINP00000008033 PUF 762 795
ENSCINP00000008033 PUF 797 831
ENSCINP00000008033 PUF 833 867
ENSCINP00000008033 PUF 869 903
ENSCINP00000008033 PUF 905 936
ENSCINP00000008033 PUF 949 978

Links

Other PUF family RBPs
Other Ciona intestinalis RBPs

87 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.764
PUM1 Homo sapiens ENSG00000134644 D 0.764
PUM1 Equus caballus ENSECAG00000021369 I 0.764
PUM1 Bos taurus ENSBTAG00000018979 I 0.764
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.764
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.760
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.760
PUM1 Canis familiaris ENSCAFG00000011205 I 0.760
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.760
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.760
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.760
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.760
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.756
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.756
Pum1 Mus musculus ENSMUSG00000028580 I 0.756
PUM1 Sus scrofa ENSSSCG00000003591 I 0.756
PUM1 Sorex araneus ENSSARG00000003055 I 0.756
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.756
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.756
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.753
PUM2 Equus caballus ENSECAG00000021930 I 0.753
PUM2 Bos taurus ENSBTAG00000011155 I 0.753
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.753
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.753
PUM2 Homo sapiens ENSG00000055917 D 0.753
PUM2 Sus scrofa ENSSSCG00000008600 I 0.753
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.753
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.753
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.753
PUM1 Microcebus murinus ENSMICG00000007713 I 0.753
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.753
Pum2 Mus musculus ENSMUSG00000020594 D 0.753
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.753
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.752
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.749
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.749
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.749
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.749
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.749
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.748
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.748
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.747
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.745
PUM2 Canis familiaris ENSCAFG00000003839 I 0.745
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.745
BAC57980 Xenopus laevis BAC57980 I 0.745
BAB20864 Xenopus laevis BAB20864 I 0.745
AAH80379 Xenopus laevis AAH80379 I 0.745
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.745
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.745
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.745
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.745
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.742
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.742
AAL14121 Xenopus laevis AAL14121 I 0.742
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.742
PUM2 Oryzias latipes ENSORLG00000012611 I 0.738
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.737
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.737
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.737
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.736
PUM1 Oryzias latipes ENSORLG00000011482 I 0.735
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.733
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.732
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.732
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.727
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.726
AGAP003914 Anopheles gambiae AGAP003914 I 0.726
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.724
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.723
GF18428 Drosophila ananassae FBgn0095446 I 0.723
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.723
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.723
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.722
GI22503 Drosophila mojavensis FBgn0145231 I 0.719
GG17394 Drosophila erecta FBgn0109620 I 0.719
AAEL012420 Aedes aegypti AAEL012420 I 0.719
GE24797 Drosophila yakuba FBgn0241899 I 0.719
GK14049 Drosophila willistoni FBgn0216055 I 0.719
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.717
GJ10105 Drosophila virilis FBgn0197393 I 0.716
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.716
GM26283 Drosophila sechellia FBgn0181138 I 0.716
pum Drosophila melanogaster FBgn0003165 D 0.716
GH15257 Drosophila grimshawi FBgn0122732 I 0.712
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.712
GL22345 Drosophila persimilis FBgn0159937 I 0.709