CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNOG_02685
(
Stagonospora nodorum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SNOG_02685
T30598_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNOT_02685
RRM
11
81
VFIGNIPYGGTEELIIETLGRVGQVNNFRLVYDKETGRPKGFGFAEFADADAAASAVRNLNDHEIMGRKLR
Links
Other
RRM
family RBPs
Other
Stagonospora nodorum
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SPPG_01899
Spizellomyces punctatus
SPPG_01899
N
0.000
UM02881
Ustilago maydis
UM02881
N
0.000
estExt_fgenesh2_pg.C_60367
Schizophyllum commune
estExt_fgenesh2_pg.C_60367
N
0.000
estExt_Genewise1.C_230050
Postia placenta
estExt_Genewise1.C_230050
N
0.000
estExt_Genewise1_worm.C_70120
Laccaria bicolor
estExt_Genewise1_worm.C_70120
N
0.000
estExt_fgenesh2_kg.C_100155
Agaricus bisporus
estExt_fgenesh2_kg.C_100155
N
0.000
fgenesh1_pm.C_scaffold_1000789
Pleurotus ostreatus
fgenesh1_pm.C_scaffold_1000789
N
0.000