CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SS1G_00605
(
Sclerotinia sclerotiorum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SS1G_00605
T30952_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SS1T_00605
RRM
178
243
IYVGRIHVSDDIEEIVARHFAEWGQVERIRVLNTRGVAFITYSNEANAQFAKEAMAHQSLDHNEIL
Links
Other
RRM
family RBPs
Other
Sclerotinia sclerotiorum
RBPs
40 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BOLL
Anolis carolinensis
ENSACAG00000009285
N
0.000
BOLL
Macaca mulatta
ENSMMUG00000023811
N
0.000
BOLL
Monodelphis domestica
ENSMODG00000012323
N
0.000
Boll
Mus musculus
ENSMUSG00000025977
N
0.000
ox_plat1_152522.152522
Ornithorhynchus anatinus
ENSOANG00000019928
N
0.000
BOLL
Oryctolagus cuniculus
ENSOCUG00000013979
N
0.000
BOLL
Otolemur garnettii
ENSOGAG00000007207
N
0.000
BOLL
Ochotona princeps
ENSOPRG00000013693
N
0.000
ENSPPYG00000013050
Pongo pygmaeus
ENSPPYG00000013050
N
0.000
BOLL
Pan troglodytes
ENSPTRG00000012777
N
0.000
BOLL
Sus scrofa
ENSSSCG00000016082
N
0.000
BOLL
Spermophilus tridecemlineatus
ENSSTOG00000003536
N
0.000
BOLL
Tupaia belangeri
ENSTBEG00000017343
N
0.000
BOLL
Taeniopygia guttata
ENSTGUG00000010496
N
0.000
BOLL
Myotis lucifugus
ENSMLUG00000004999
N
0.000
BOLL
Microcebus murinus
ENSMICG00000011845
N
0.000
ENSMGAG00000007162
Meleagris gallopavo
ENSMGAG00000007162
N
0.000
C1JGV6_BOVIN
Bos taurus
ENSBTAG00000031614
N
0.000
BOLL
Canis familiaris
ENSCAFG00000010947
N
0.000
BOLL
Choloepus hoffmanni
ENSCHOG00000012634
N
0.000
Q6EVI8_CALJA
Callithrix jacchus
ENSCJAG00000004092
N
0.000
BOLL
Cavia porcellus
ENSCPOG00000000390
N
0.000
Boll
Dipodomys ordii
ENSDORG00000010791
N
0.000
BOLL
Erinaceus europaeus
ENSEEUG00000003441
N
0.000
BOLL
Echinops telfairi
ENSETEG00000013582
N
0.000
BOLL
Homo sapiens
ENSG00000152430
N
0.000
BOLL
Gallus gallus
ENSGALG00000008116
N
0.000
BOLL
Gorilla gorilla
ENSGGOG00000013594
N
0.000
BOLL
Loxodonta africana
ENSLAFG00000010956
N
0.000
BOLL
Macropus eugenii
ENSMEUG00000011305
N
0.000
Ame_R008142
Ailuropoda melanoleuca
Ame_R008142
N
0.000