CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
amel4_ncbi_hmm17771
(
Tribolium castaneum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
amel4_ncbi_hmm17771
T31868_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
amel4_ncbi_hmm17771
RRM
145
218
LYLGNLNPKITEQQLMEIFGKYGPLASIKIMWPRSDEEKARQRNCGFVAFMSRKDGERALKNLNGRDIMQYEMK
Links
Other
RRM
family RBPs
Other
Tribolium castaneum
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ014539
Culex pipiens
CpipJ_CPIJ014539
N
0.811
GM15794
Drosophila sechellia
FBgn0170710
N
0.851
GD11555
Drosophila simulans
FBgn0183296
N
0.851
GJ21992
Drosophila virilis
FBgn0209106
N
0.838
GK22959
Drosophila willistoni
FBgn0224921
N
0.824
GE12157
Drosophila yakuba
FBgn0229923
N
0.838
PHUM176690
Pediculus humanus
PHUM176690
N
0.851
e_gw1.11.101.1
Capitella teleta
e_gw1.11.101.1
N
0.716
e_gw1.134.6.1
Lottia gigantea
e_gw1.134.6.1
N
0.703
estExt_Genewise1.C_650028
Daphnia pulex
estExt_Genewise1.C_650028
N
0.770
Sjc_0023880
Schistosoma japonicum
Sjc_0023880
N
0.730
BGIBMGA003602
Bombyx mori
BGIBMGA003602
N
0.878
GL10142
Drosophila persimilis
FBgn0147752
N
0.838
GI21069
Drosophila mojavensis
FBgn0143801
N
0.838
GH20523
Drosophila grimshawi
FBgn0127986
N
0.838
amel4_ncbi_hmm17771
Apis mellifera
amel4_ncbi_hmm17771
N
1.000
DGIL_AUG5s11505g3t1
Acyrtosiphon pisum
DGIL_AUG5s11505g3t1
N
0.892
DGIL_AUG5s8618g4t1
Acyrtosiphon pisum
DGIL_AUG5s8618g4t1
N
0.905
nasonia_NCBI_hmm274824
Nasonia vitripennis
nasonia_NCBI_hmm274824
N
0.946
AAEL012045
Aedes aegypti
AAEL012045
N
0.784
AGAP005006
Anopheles gambiae
AGAP005006
N
0.824
CPIJ014539
Culex quinquefasciatus
CPIJ014539
N
0.811
CG9346
Drosophila melanogaster
FBgn0034572
N
0.851
GA21718-RA
Drosophila pseudoobscura
FBgn0081703
N
0.838
GF11923
Drosophila ananassae
FBgn0088962
N
0.797
GG22076
Drosophila erecta
FBgn0114251
N
0.838
Smp_161730
Schistosoma mansoni
Smp_161730
N
0.730