XM_002883791.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Al_scaffold_0003_3307 T32592_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.762
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0003_3307 RRM 27 97
Al_scaffold_0003_3307 RRM 114 185

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.762
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.734
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.804
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.790
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.755
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.755
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.804
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.720
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.720
MDP0000131129 Malus x domestica MDP0000131129 I 0.811
MDP0000320945 Malus x domestica MDP0000320945 I 0.811
PK08238.1 Cannabis sativa PK08238.1 I 0.818
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.811
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.797
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.762
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.748
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.804
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.797
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.762
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.804
SB01G020190 Sorghum bicolor Sb01g020190 I 0.762
30183.m001303 Ricinus communis 30183.m001303 I 0.783
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.804
ppa007508m Prunus persica ppa007508m I 0.797