30183.m001303 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 30183.m001303 T48790_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.916
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.792
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.769
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
30183.m001303 RRM 27 97
30183.m001303 RRM 114 185

Links

Other RRM family RBPs
Other Ricinus communis RBPs

127 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.972
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.958
PK08238.1 Cannabis sativa PK08238.1 I 0.958
ppa007508m Prunus persica ppa007508m I 0.951
MDP0000320945 Malus x domestica MDP0000320945 I 0.951
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.951
MDP0000131129 Malus x domestica MDP0000131129 I 0.951
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.937
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.937
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.937
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.937
SB01G020190 Sorghum bicolor Sb01g020190 I 0.923
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.923
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.923
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.916
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.916
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.909
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.909
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.881
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.874
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.832
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.818
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.818
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.811
AAH77458 Xenopus laevis AAH77458 I 0.811
AAH45264 Xenopus laevis AAH45264 I 0.811
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.811
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.811
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.811
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.804
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.804
SF3B4 Gallus gallus ENSGALG00000013352 I 0.804
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.804
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.804
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.804
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.804
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.804
SF3B4 Homo sapiens ENSG00000143368 I 0.804
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.804
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.804
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.804
sf3b4 Danio rerio ENSDARG00000018574 D 0.804
LOC100054350 Equus caballus ENSECAG00000024737 I 0.804
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.804
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.804
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.804
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.804
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.804
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.804
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.804
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.804
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.804
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.804
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.804
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.804
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.804
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.804
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.804
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.804
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.804
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.804
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.804
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.804
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.804
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.797
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.797
ISCW010601 Ixodes scapularis ISCW010601 I 0.797
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.797
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.797
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.797
AAEL013795 Aedes aegypti AAEL013795 I 0.797
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.797
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.797
GJ15655 Drosophila virilis FBgn0202845 I 0.790
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.790
GI16317 Drosophila mojavensis FBgn0139065 I 0.790
GH17589 Drosophila grimshawi FBgn0125059 I 0.790
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.783
PHUM263440 Pediculus humanus PHUM263440 I 0.783
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.783
GG19577 Drosophila erecta FBgn0111779 I 0.783
GF20385 Drosophila ananassae FBgn0097392 I 0.783
GK19717 Drosophila willistoni FBgn0221715 I 0.783
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.783
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.783
GL21313 Drosophila persimilis FBgn0158906 I 0.783
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.783
GE16738 Drosophila yakuba FBgn0234234 I 0.783
AGAP001538 Anopheles gambiae AGAP001538 I 0.783
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.783
XM_002883791.1 Arabidopsis lyrata Al_scaffold_0003_3307 I 0.783
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.779
GM12470 Drosophila sechellia FBgn0167407 I 0.776
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.776
Spx Drosophila melanogaster FBgn0015818 I 0.776
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.776
99199 Helobdella robusta 99199 I 0.776
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.769
Smp_067420 Schistosoma mansoni Smp_067420 D 0.769
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.769
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.762
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.755
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.748
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.748
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.748
LOAG_01189 Loa loa LOAG_01189 I 0.741
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.741
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.741
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.741
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.741
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.734
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.734
Bm1_43460 Brugia malayi Bm1_43460 I 0.734
sap-49 Caenorhabditis elegans C08B11.5 D 0.727
CBN06124 Caenorhabditis brenneri CBN06124 I 0.727
CRE01639 Caenorhabditis remanei CRE01639 I 0.727
59062 Aureococcus anophagefferens 59062 I 0.727
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.720
Minc02568 Meloidogyne incognita Minc02568 I 0.720
Minc01580 Meloidogyne incognita Minc01580 I 0.720
Minc12926 Meloidogyne incognita Minc12926 I 0.720
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.713
CJA19238 Caenorhabditis japonica CJA19238 I 0.713
CBG13349 Caenorhabditis briggsae CBG13349 I 0.713
estExt_Genewise1Plus.C_20198 Mucor circinelloides estExt_Genewise1Plus.C_20198 I 0.706
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.706
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.706