CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A6MKH3_CALJA
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000002368
T35479_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000004335
RRM
280
339
YGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLK
ENSCJAP00000004346
RRM
216
275
YGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLK
ENSCJAP00000004354
RRM
273
332
YGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLK
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.000
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.000
B9N500_POPTR
Populus trichocarpa
POPTR_0008s22730
N
0.000
B9HSD6_POPTR
Populus trichocarpa
POPTR_0010s02320
N
0.000
cassava24680.valid.m1
Manihot esculenta
cassava24680.valid.m1
N
0.000
Glyma02g17250.1
Glycine max
Glyma02g17250.1
N
0.000
Medtr8g139280
Medicago truncatula
Medtr8g139280
N
0.000