CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava24680.valid.m1
(
Manihot esculenta
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
cassava24680.valid.m1
T04767_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava24680.valid.m1
CCCH ZF
49
75
PGVPDCVYYMRTGFCGYGSRCRYNHPR
cassava24680.valid.m1
CCCH ZF
95
120
GEPPCQFYLKTGTCKFGASCKFHHPK
cassava24680.valid.m1
CCCH ZF
140
166
PGEIECSYYLKTGQCKFGVTCKFHHPQ
cassava24680.valid.m1
CCCH ZF
295
321
PGEPECQYYLRTGDCKFGSSCRYHHPR
Links
Other
CCCH ZF
family RBPs
Other
Manihot esculenta
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000310338
Malus x domestica
MDP0000310338
N
0.907
Glyma02g17250.1
Glycine max
Glyma02g17250.1
N
0.897
B9HSD6_POPTR
Populus trichocarpa
POPTR_0010s02320
N
0.794
B9N500_POPTR
Populus trichocarpa
POPTR_0008s22730
N
0.794
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.769
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.759
Medtr8g139280
Medicago truncatula
Medtr8g139280
N
0.757
LOC_Os11g28270
Oryza sativa
LOC_Os11g28270
N
0.710