cassava24680.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava24680.valid.m1 T04767_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava24680.valid.m1 CCCH ZF 49 75
cassava24680.valid.m1 CCCH ZF 95 120
cassava24680.valid.m1 CCCH ZF 140 166
cassava24680.valid.m1 CCCH ZF 295 321

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

8 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000310338 Malus x domestica MDP0000310338 N 0.907
Glyma02g17250.1 Glycine max Glyma02g17250.1 N 0.897
B9HSD6_POPTR Populus trichocarpa POPTR_0010s02320 N 0.794
B9N500_POPTR Populus trichocarpa POPTR_0008s22730 N 0.794
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.769
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.759
Medtr8g139280 Medicago truncatula Medtr8g139280 N 0.757
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.710