B9N500_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0008s22730 T04045_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s22730.1 CCCH ZF 49 74
POPTR_0008s22730.1 CCCH ZF 95 120
POPTR_0008s22730.1 CCCH ZF 140 166
POPTR_0008s22730.1 CCCH ZF 302 328

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HSD6_POPTR Populus trichocarpa POPTR_0010s02320 N 0.963
Medtr8g139280 Medicago truncatula Medtr8g139280 N 0.813
cassava24680.valid.m1 Manihot esculenta cassava24680.valid.m1 N 0.794
MDP0000310338 Malus x domestica MDP0000310338 N 0.776
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.769
Glyma02g17250.1 Glycine max Glyma02g17250.1 N 0.738
LjT18C07.20.nc Lotus japonicus LjT18C07.20.nc N 0.720
Glyma13g28820.1 Glycine max Glyma13g28820.1 N 0.710
Glyma15g10230.1 Glycine max Glyma15g10230.1 N 0.701
Medtr2g024920 Medicago truncatula Medtr2g024920 N 0.701