Medtr8g139280 (Medicago truncatula)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Medtr8g139280 T05805_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr8g139280.1 CCCH ZF 47 73
Medtr8g139280.1 CCCH ZF 93 118
Medtr8g139280.1 CCCH ZF 139 164
Medtr8g139280.1 CCCH ZF 334 360

Links

Other CCCH ZF family RBPs
Other Medicago truncatula RBPs

11 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HSD6_POPTR Populus trichocarpa POPTR_0010s02320 N 0.822
B9N500_POPTR Populus trichocarpa POPTR_0008s22730 N 0.813
LjT18C07.20.nc Lotus japonicus LjT18C07.20.nc N 0.804
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.787
Glyma13g28820.1 Glycine max Glyma13g28820.1 N 0.776
Glyma15g10230.1 Glycine max Glyma15g10230.1 N 0.766
Medtr2g024920 Medicago truncatula Medtr2g024920 N 0.766
cassava24680.valid.m1 Manihot esculenta cassava24680.valid.m1 N 0.757
Glyma02g17250.1 Glycine max Glyma02g17250.1 N 0.738
MDP0000310338 Malus x domestica MDP0000310338 N 0.738
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.710