BRADI2G09350 (Brachypodium distachyon)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 BRADI2G09350 T01985_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G09350.1 CCCH ZF 26 52
BRADI2G09350.1 CCCH ZF 75 101
BRADI2G09350.1 CCCH ZF 120 146
BRADI2G09350.1 CCCH ZF 272 298
BRADI2G09350.1 CCCH ZF 318 344
BRADI2G09350.2 CCCH ZF 26 52
BRADI2G09350.2 CCCH ZF 75 101
BRADI2G09350.2 CCCH ZF 120 146
BRADI2G09350.2 CCCH ZF 272 298
BRADI2G09350.2 CCCH ZF 318 344
BRADI2G09350.3 CCCH ZF 26 52
BRADI2G09350.3 CCCH ZF 75 101
BRADI2G09350.3 CCCH ZF 120 146
BRADI2G09350.3 CCCH ZF 272 298

Links

Other CCCH ZF family RBPs
Other Brachypodium distachyon RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB03G009930 Sorghum bicolor Sb03g009930 N 0.933
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.926
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.926
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.926
mgf008934m Mimulus guttatus mgf008934m N 0.800
mgf002685m Mimulus guttatus mgf002685m N 0.793
Medtr8g139280 Medicago truncatula Medtr8g139280 N 0.787
29726.m004014 Ricinus communis 29726.m004014 N 0.785
MDP0000319251 Malus x domestica MDP0000319251 N 0.785
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.785
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.778
SB03G009920 Sorghum bicolor Sb03g009920 N 0.778
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.778
ppa005056m Prunus persica ppa005056m N 0.778
B9HSD6_POPTR Populus trichocarpa POPTR_0010s02320 N 0.778
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.778
B9N500_POPTR Populus trichocarpa POPTR_0008s22730 N 0.769
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.763
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.763
MDP0000535412 Malus x domestica MDP0000535412 N 0.763
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.763
BGIOSIBCE001192 Oryza indica BGIOSIBCE001192 N 0.759
cassava24680.valid.m1 Manihot esculenta cassava24680.valid.m1 N 0.759
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.756
PK29685.1 Cannabis sativa PK29685.1 N 0.756
Glyma02g17250.1 Glycine max Glyma02g17250.1 N 0.750
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.748
LjT18C07.20.nc Lotus japonicus LjT18C07.20.nc N 0.741
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.733
mgf026218m Mimulus guttatus mgf026218m N 0.733
Glyma13g28820.1 Glycine max Glyma13g28820.1 N 0.731
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.726
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.726
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.726
Glyma15g10230.1 Glycine max Glyma15g10230.1 N 0.722
MDP0000310338 Malus x domestica MDP0000310338 N 0.722
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.719
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.719
Medtr2g024920 Medicago truncatula Medtr2g024920 N 0.713
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.713
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.711
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.711
29647.m002009 Ricinus communis 29647.m002009 N 0.711
ppa005229m Prunus persica ppa005229m N 0.711
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.711
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.704
MDP0000207283 Malus x domestica MDP0000207283 N 0.704
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.704