CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Tnrc6c
(
Mus musculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMUSG00000025571
T39270_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000026658
RRM
1726
1790
LVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTIL
ENSMUSP00000101951
RRM
1726
1790
LVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTIL
ENSMUSP00000115221
RRM
1558
1622
LVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTIL
Links
Other
RRM
family RBPs
Other
Mus musculus
RBPs
116 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FUS
Macropus eugenii
ENSMEUG00000000968
I
0.000
FUS
Tetraodon nigroviridis
ENSTNIG00000011303
I
0.000
AAH74437
Xenopus laevis
AAH74437
I
0.000
AAH44319
Xenopus laevis
AAH44319
I
0.000
fus
Xenopus tropicalis
ENSXETG00000001951
I
0.000
Q5ZML8_CHICK
Gallus gallus
ENSGALG00000008149
N
0.000
EWSR1
Pan troglodytes
ENSPTRG00000014218
N
0.000
ENSPPYG00000011684
Pongo pygmaeus
ENSPPYG00000011684
N
0.000
ENSPPYG00000000560
Pongo pygmaeus
ENSPPYG00000000560
N
0.000
EWSR1
Procavia capensis
ENSPCAG00000010966
N
0.000
EWSR1
Oryzias latipes
ENSORLG00000006712
N
0.000
ENSOCUG00000027270
Oryctolagus cuniculus
ENSOCUG00000027270
N
0.000
ENSOCUG00000023130
Oryctolagus cuniculus
ENSOCUG00000023130
N
0.000
ENSPTRG00000034346
Pan troglodytes
ENSPTRG00000034346
N
0.000
EWSR1
Pteropus vampyrus
ENSPVAG00000009815
N
0.000
Ewsr1
Rattus norvegicus
ENSRNOG00000009437
N
0.000
AAI08816
Xenopus laevis
AAI08816
N
0.000
AAI08750
Xenopus laevis
AAI08750
N
0.000
AAH97641
Xenopus laevis
AAH97641
N
0.000
Ame_R003420
Ailuropoda melanoleuca
Ame_R003420
N
0.000
ewsr1
Xenopus tropicalis
ENSXETG00000024796
N
0.000
EWSR1
Tursiops truncatus
ENSTTRG00000011881
N
0.000
EWSR1
Taeniopygia guttata
ENSTGUG00000010419
N
0.000
EWSR1
Sus scrofa
ENSSSCG00000009974
N
0.000
ENSOCUG00000004432
Oryctolagus cuniculus
ENSOCUG00000004432
N
0.000
EWSR1
Ornithorhynchus anatinus
ENSOANG00000001304
N
0.000
Ewsr1
Mus musculus
ENSMUSG00000009079
N
0.000
EWSR1
Erinaceus europaeus
ENSEEUG00000012884
N
0.000
Q6X9Y1_HORSE
Equus caballus
ENSECAG00000022120
N
0.000
ewsr1a
Danio rerio
ENSDARG00000020258
N
0.000
ENSCJAG00000019987
Callithrix jacchus
ENSCJAG00000019987
N
0.000
ENSCJAG00000013644
Callithrix jacchus
ENSCJAG00000013644
N
0.000
ENSCHOG00000009549
Choloepus hoffmanni
ENSCHOG00000009549
N
0.000
ENSCAFG00000018550
Canis familiaris
ENSCAFG00000018550
N
0.000
LOC607046
Canis familiaris
ENSCAFG00000012160
N
0.000
ENSCAFG00000007811
Canis familiaris
ENSCAFG00000007811
N
0.000
A8E651_BOVIN
Bos taurus
ENSBTAG00000017755
N
0.000
EWSR1
Echinops telfairi
ENSETEG00000003856
N
0.000
EWSR1
Felis catus
ENSFCAG00000004243
N
0.000
XM_001372950.1
Monodelphis domestica
ENSMODG00000010492
N
0.000
XM_001364468.1
Monodelphis domestica
ENSMODG00000008679
N
0.000
EWSR1
Macaca mulatta
ENSMMUG00000021374
N
0.000
EWSR1
Microcebus murinus
ENSMICG00000004264
N
0.000
EWSR1
Meleagris gallopavo
ENSMGAG00000005282
N
0.000
ENSMEUG00000008703
Macropus eugenii
ENSMEUG00000008703
N
0.000
EWSR1
Macropus eugenii
ENSMEUG00000002729
N
0.000
EWSR1
Loxodonta africana
ENSLAFG00000015757
N
0.000
EWSR1
Gorilla gorilla
ENSGGOG00000012212
N
0.000
EWSR1
Homo sapiens
ENSG00000182944
N
0.000
EWSR1
Anolis carolinensis
ENSACAG00000009298
N
0.000