PABPC4 (Oryctolagus cuniculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOCUG00000000562 T39587_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.986
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.885
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.885
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.885
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.821
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000000485 RRM 13 83
ENSOCUP00000000485 RRM 101 169
ENSOCUP00000000485 RRM 193 262
ENSOCUP00000000485 RRM 296 364

Links

Other RRM family RBPs
Other Oryctolagus cuniculus RBPs

174 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.000
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.000
SFPQ Sorex araneus ENSSARG00000006409 N 0.000
PSPC1 Otolemur garnettii ENSOGAG00000012643 N 0.000
PSPC1 Ornithorhynchus anatinus ENSOANG00000009017 N 0.000
LOC100053345 Equus caballus ENSECAG00000017286 N 0.000
PSPC1 Microcebus murinus ENSMICG00000013970 N 0.000
PSPC1 Meleagris gallopavo ENSMGAG00000015134 N 0.000
SFPQ Felis catus ENSFCAG00000012305 N 0.000
PSPC1 Vicugna pacos ENSVPAG00000010029 N 0.000