CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SCAF8
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000026063
T39782_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000019123
RRM
479
545
LWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIK
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
61 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK28027.1
Cannabis sativa
PK28027.1
I
0.000
estExt_Genewise1.C_3910068
Physcomitrella patens
estExt_Genewise1.C_3910068
I
0.000
fgenesh1_pm.C_scaffold_35000004
Selaginella moellendorfii
fgenesh1_pm.C_scaffold_35000004
I
0.000
fgenesh2_pg.C_scaffold_39000056
Selaginella moellendorfii
fgenesh2_pg.C_scaffold_39000056
I
0.000
Glyma07g38940.1
Glycine max
Glyma07g38940.1
I
0.000
Glyma13g27570.1
Glycine max
Glyma13g27570.1
I
0.000
Glyma13g41500.1
Glycine max
Glyma13g41500.1
I
0.000
Glyma15g11380.1
Glycine max
Glyma15g11380.1
I
0.000
Glyma17g01800.1
Glycine max
Glyma17g01800.1
I
0.000
gw1.219.6.1
Physcomitrella patens
gw1.219.6.1
I
0.000
gw1.339.2.1
Physcomitrella patens
gw1.339.2.1
I
0.000
mgf010468m
Mimulus guttatus
mgf010468m
I
0.000
mgf023806m
Mimulus guttatus
mgf023806m
I
0.000
GRMZM2G142557
Zea mays
GRMZM2G142557
I
0.000
Medtr2g117480
Medicago truncatula
Medtr2g117480
I
0.000
MDP0000276227
Malus x domestica
MDP0000276227
I
0.000
Cucsa.301810
Cucumis sativus
Cucsa.301810
I
0.000
Cucsa.085920
Cucumis sativus
Cucsa.085920
I
0.000
Cucsa.085910
Cucumis sativus
Cucsa.085910
I
0.000
BRADI1G73030
Brachypodium distachyon
BRADI1G73030
I
0.000
GSVIVG00031780001
Vitis vinifera
GSVIVG00031780001
I
0.000
LOC_Os03g07800
Oryza sativa
LOC_Os03g07800
I
0.000
B9HNV7_POPTR
Populus trichocarpa
POPTR_0009s05920
I
0.000
B9MVK8_POPTR
Populus trichocarpa
POPTR_0014s03390
I
0.000
SB01G045570
Sorghum bicolor
Sb01g045570
I
0.000
30169.m006434
Ricinus communis
30169.m006434
I
0.000
cassava2135.valid.m1
Manihot esculenta
cassava2135.valid.m1
I
0.000
cassava36999.valid.m1
Manihot esculenta
cassava36999.valid.m1
I
0.000
cassava37003.valid.m1
Manihot esculenta
cassava37003.valid.m1
I
0.000
ppa005940m
Prunus persica
ppa005940m
I
0.000
cassava37002.valid.m1
Manihot esculenta
cassava37002.valid.m1
I
0.000
cassava37001.valid.m1
Manihot esculenta
cassava37001.valid.m1
I
0.000
cassava37000.valid.m1
Manihot esculenta
cassava37000.valid.m1
I
0.000
Glyma11g14150.1
Glycine max
Glyma11g14150.1
N
0.000
Glyma12g06120.1
Glycine max
Glyma12g06120.1
N
0.000
MDP0000123012
Malus x domestica
MDP0000123012
N
0.000
MDP0000123414
Malus x domestica
MDP0000123414
N
0.000
AT5G19350
Arabidopsis thaliana
AT5G19350-TAIR-G
N
0.000
XM_002871835.1
Arabidopsis lyrata
fgenesh2_kg.6__1954__AT5G19350.2
N
0.000