CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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G3BP1
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000011422
T40190_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP1
M302_0.6
Homo sapiens
Sequence logo not available
ACCCMYMSGCMS
SELEX
Cook et al.(2011)
432_11604510
0.781
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000014306
RRM
353
416
LFVGNVPHDVDKNELKEFFEQYGAVLELRINSGGKLPNFGFVVFDDSEPVQKILNNKPIKFRGD
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
85 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MKI67IP
Canis familiaris
ENSCAFG00000004710
N
0.000
mki67ip
Xenopus tropicalis
ENSXETG00000000839
N
0.000
MKI67IP
Oryctolagus cuniculus
ENSOCUG00000007451
N
0.000
XM_001364715.1
Monodelphis domestica
ENSMODG00000000152
N
0.000
MKI67IP
Meleagris gallopavo
ENSMGAG00000011953
N
0.000
MKI67IP
Loxodonta africana
ENSLAFG00000030731
N
0.000
MKI67IP
Gallus gallus
ENSGALG00000011650
N
0.000
mki67ip
Danio rerio
ENSDARG00000040666
N
0.000
MKI67IP
Choloepus hoffmanni
ENSCHOG00000002227
N
0.000
Ame_R009999
Ailuropoda melanoleuca
Ame_R009999
N
0.000