CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000008679
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000008679
T40498_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000009747
RRM
1565
1629
LVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTIL
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
115 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os01g52000
Oryza sativa
LOC_Os01g52000
N
0.000
LOC_Os10g26030
Oryza sativa
LOC_Os10g26030
N
0.000
LOC_Os09g08340
Oryza sativa
LOC_Os09g08340
N
0.000
LOC_Os08g03180
Oryza sativa
LOC_Os08g03180
N
0.000
LOC_Os07g05430
Oryza sativa
LOC_Os07g05430
N
0.000
LOC_Os03g56530
Oryza sativa
LOC_Os03g56530
N
0.000
LOC_Os03g47410
Oryza sativa
LOC_Os03g47410
N
0.000
LOC_Os03g28110
Oryza sativa
LOC_Os03g28110
N
0.000
LOC_Os03g05850
Oryza sativa
LOC_Os03g05850
N
0.000
LOC_Os02g05260
Oryza sativa
LOC_Os02g05260
N
0.000
LOC_Os12g01090
Oryza sativa
LOC_Os12g01090
N
0.000