tnrc6c (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000019470 T42923_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000037669 RRM 1352 1416
ENSXETP00000037671 RRM 272 336
ENSXETP00000042192 RRM 1602 1666
ENSXETP00000042195 RRM 1545 1609
ENSXETP00000042202 RRM 1182 1246

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
TNRC6C Gorilla gorilla ENSGGOG00000011304 N 0.985
TNRC6C Meleagris gallopavo ENSMGAG00000003906 N 0.985
TNRC6C Gallus gallus ENSGALG00000001725 N 0.985
TNRC6C Homo sapiens ENSG00000078687 N 0.985
TNRC6C Cavia porcellus ENSCPOG00000000467 N 0.985
TNRC6C Dasypus novemcinctus ENSDNOG00000003247 N 0.985
LOC100058134 Equus caballus ENSECAG00000012486 N 0.985
TNRC6C Microcebus murinus ENSMICG00000003952 N 0.985
TNRC6C Macaca mulatta ENSMMUG00000011924 N 0.985
TNRC6C Pan troglodytes ENSPTRG00000009699 N 0.985
TNRC6C Taeniopygia guttata ENSTGUG00000007733 N 0.985
TNRC6C Tursiops truncatus ENSTTRG00000010828 N 0.985
ENSPPYG00000008679 Pongo pygmaeus ENSPPYG00000008679 N 0.985
TNRC6C Ornithorhynchus anatinus ENSOANG00000009758 N 0.985
TNRC6C Monodelphis domestica ENSMODG00000001785 N 0.985
Tnrc6c Mus musculus ENSMUSG00000025571 N 0.985
TNRC6C Callithrix jacchus ENSCJAG00000019431 N 0.985
TNRC6C Macropus eugenii ENSMEUG00000005104 N 0.985
TNRC6C Anolis carolinensis ENSACAG00000016198 N 0.985
TNRC6C Danio rerio ENSDARG00000078036 N 0.969
TNRC6C Canis familiaris ENSCAFG00000005224 N 0.969
TNRC6C Felis catus ENSFCAG00000013005 N 0.969
TNRC6C Danio rerio ENSDARG00000076847 N 0.969
TNRC6C Danio rerio ENSDARG00000076356 N 0.969
TNRC6C Bos taurus ENSBTAG00000018658 N 0.969
Ame_R006400 Ailuropoda melanoleuca Ame_R006400 N 0.969
TNRC6C Loxodonta africana ENSLAFG00000011122 N 0.969
TNRC6C Echinops telfairi ENSETEG00000005527 N 0.969
TNRC6C Oryzias latipes ENSORLG00000003327 N 0.954
TNRC6C Gasterosteus aculeatus ENSGACG00000012320 N 0.954
TNRC6C Procavia capensis ENSPCAG00000012510 N 0.954
TNRC6C Tetraodon nigroviridis ENSTNIG00000004178 N 0.954
TNRC6C Tetraodon nigroviridis ENSTNIG00000005273 N 0.938
TNRC6C Takifugu rubripes ENSTRUG00000012583 N 0.938
TNRC6C Oryzias latipes ENSORLG00000009837 N 0.938
TNRC6C Takifugu rubripes ENSTRUG00000011685 N 0.938
TNRC6A Danio rerio ENSDARG00000079688 N 0.908
TNRC6A Macropus eugenii ENSMEUG00000015959 N 0.892
TNRC6A Tarsius syrichta ENSTSYG00000012711 N 0.892
TNRC6A Bos taurus ENSBTAG00000017999 N 0.892
TNRC6A Loxodonta africana ENSLAFG00000004209 N 0.892
TNRC6A Ornithorhynchus anatinus ENSOANG00000007672 N 0.892
Ame_R017991 Ailuropoda melanoleuca Ame_R017991 N 0.892
TNRC6A Monodelphis domestica ENSMODG00000016348 N 0.892
TNRC6A Callithrix jacchus ENSCJAG00000020677 N 0.892
Tnrc6a Mus musculus ENSMUSG00000052707 N 0.892
TNRC6A Tursiops truncatus ENSTTRG00000002008 N 0.892
TNRC6A Oryctolagus cuniculus ENSOCUG00000004325 N 0.892
TNRC6A Microcebus murinus ENSMICG00000001883 N 0.892
TNRC6A Meleagris gallopavo ENSMGAG00000006455 N 0.892
TNRC6A Gallus gallus ENSGALG00000006068 N 0.892
Tnrc6a Rattus norvegicus ENSRNOG00000024737 N 0.892
TNRC6A Choloepus hoffmanni ENSCHOG00000009374 N 0.892
TNRC6A Homo sapiens ENSG00000090905 N 0.892
TNRC6A Tupaia belangeri ENSTBEG00000014965 N 0.892
TNRC6A Equus caballus ENSECAG00000025056 N 0.892
TNRC6A Taeniopygia guttata ENSTGUG00000006142 N 0.892
TNRC6A Canis familiaris ENSCAFG00000017531 N 0.892
ENSPPYG00000007202 Pongo pygmaeus ENSPPYG00000007202 N 0.892
TNRC6A Macaca mulatta ENSMMUG00000020428 N 0.892
Tnrc6a Dipodomys ordii ENSDORG00000014734 N 0.892
TNRC6A Gorilla gorilla ENSGGOG00000005137 N 0.892
TNRC6A Gasterosteus aculeatus ENSGACG00000014332 N 0.892
TNRC6A Oryzias latipes ENSORLG00000012798 N 0.892
TNRC6A Ochotona princeps ENSOPRG00000005819 N 0.877
TNRC6A Takifugu rubripes ENSTRUG00000009839 N 0.877
TNRC6C Otolemur garnettii ENSOGAG00000007197 N 0.877
TNRC6A Anolis carolinensis ENSACAG00000011857 N 0.877
estExt_fgenesh2_pg.C_4930048 Branchiostoma floridae estExt_fgenesh2_pg.C_4930048 N 0.831
estExt_fgenesh2_pg.C_5340004 Branchiostoma floridae estExt_fgenesh2_pg.C_5340004 N 0.831
TNRC6B Sorex araneus ENSSARG00000007971 N 0.815
TNRC6B Sus scrofa ENSSSCG00000000078 N 0.815
TNRC6B Spermophilus tridecemlineatus ENSSTOG00000008927 N 0.815
Tnrc6b Rattus norvegicus ENSRNOG00000024907 N 0.815
TNRC6B Pteropus vampyrus ENSPVAG00000004975 N 0.815
ENSPPYG00000011849 Pongo pygmaeus ENSPPYG00000011849 N 0.815
TNRC6B Macaca mulatta ENSMMUG00000021345 N 0.815
TNRC6B Erinaceus europaeus ENSEEUG00000008690 N 0.815
TNRC6B Equus caballus ENSECAG00000009759 N 0.815
TNRC6B Choloepus hoffmanni ENSCHOG00000010004 N 0.815
ENSCJAG00000031596 Callithrix jacchus ENSCJAG00000031596 N 0.815
TNRC6B Tarsius syrichta ENSTSYG00000011836 N 0.815
TNRC6B Cavia porcellus ENSCPOG00000005705 N 0.815
TNRC6B Homo sapiens ENSG00000100354 N 0.815
Tnrc6b Dipodomys ordii ENSDORG00000003386 N 0.815
TNRC6B Tursiops truncatus ENSTTRG00000011465 N 0.815
XR_024166.1 Pan troglodytes ENSPTRG00000014406 N 0.815
TNRC6B Microcebus murinus ENSMICG00000014056 N 0.815
TNRC6B Loxodonta africana ENSLAFG00000014473 N 0.815
TNRC6B Oryctolagus cuniculus ENSOCUG00000016128 N 0.815
Tnrc6b Mus musculus ENSMUSG00000047888 N 0.815
TNRC6B Myotis lucifugus ENSMLUG00000008765 N 0.815
TNRC6B Anolis carolinensis ENSACAG00000007281 N 0.815
TNRC6B Monodelphis domestica ENSMODG00000008960 N 0.815
TNRC6B Gorilla gorilla ENSGGOG00000008444 N 0.815
TNRC6B Bos taurus ENSBTAG00000021076 N 0.815
TNRC6B Canis familiaris ENSCAFG00000001255 N 0.815
TNRC6B Ochotona princeps ENSOPRG00000012054 N 0.815
TNRC6B Danio rerio ENSDARG00000074161 N 0.800
TNRC6B Danio rerio ENSDARG00000076389 N 0.800
TNRC6C Gasterosteus aculeatus ENSGACG00000019401 N 0.800
Ame_R002380 Ailuropoda melanoleuca Ame_R002380 N 0.800
TNRC6B Gallus gallus ENSGALG00000012050 N 0.800
TNRC6B Takifugu rubripes ENSTRUG00000016987 N 0.800
TNRC6B Dasypus novemcinctus ENSDNOG00000012744 N 0.800
TNRC6B Meleagris gallopavo ENSMGAG00000012333 N 0.800
TNRC6B Taeniopygia guttata ENSTGUG00000010128 N 0.800
TNRC6B Gasterosteus aculeatus ENSGACG00000004573 N 0.800
ENSTGUG00000010138 Taeniopygia guttata ENSTGUG00000010138 N 0.800
TNRC6B Oryzias latipes ENSORLG00000002794 N 0.785
TNRC6B Gasterosteus aculeatus ENSGACG00000007421 N 0.769
TNRC6A Myotis lucifugus ENSMLUG00000002701 N 0.769
TNRC6B Tupaia belangeri ENSTBEG00000017272 N 0.769
TNRC6A Echinops telfairi ENSETEG00000014658 N 0.723
PASA_GEN_0100279 Daphnia pulex PASA_GEN_0100279 N 0.723