estExt_fgenesh2_pg.C_4930048 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pg.C_4930048 T50860_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_4930048 RRM 1204 1268

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh2_pg.C_5340004 Branchiostoma floridae estExt_fgenesh2_pg.C_5340004 N 1.000
TNRC6A Danio rerio ENSDARG00000079688 N 0.877
TNRC6C Danio rerio ENSDARG00000076847 N 0.862
TNRC6C Danio rerio ENSDARG00000078036 N 0.862
TNRC6A Takifugu rubripes ENSTRUG00000009839 N 0.862
TNRC6C Danio rerio ENSDARG00000076356 N 0.862
TNRC6A Gasterosteus aculeatus ENSGACG00000014332 N 0.862
TNRC6A Microcebus murinus ENSMICG00000001883 N 0.846
TNRC6C Microcebus murinus ENSMICG00000003952 N 0.846
TNRC6C Macaca mulatta ENSMMUG00000011924 N 0.846
TNRC6A Macaca mulatta ENSMMUG00000020428 N 0.846
TNRC6A Macropus eugenii ENSMEUG00000015959 N 0.846
TNRC6A Gorilla gorilla ENSGGOG00000005137 N 0.846
TNRC6A Gallus gallus ENSGALG00000006068 N 0.846
TNRC6C Gallus gallus ENSGALG00000001725 N 0.846
TNRC6C Gorilla gorilla ENSGGOG00000011304 N 0.846
TNRC6A Loxodonta africana ENSLAFG00000004209 N 0.846
TNRC6C Monodelphis domestica ENSMODG00000001785 N 0.846
TNRC6C Macropus eugenii ENSMEUG00000005104 N 0.846
TNRC6C Loxodonta africana ENSLAFG00000011122 N 0.846
TNRC6C Meleagris gallopavo ENSMGAG00000003906 N 0.846
Tnrc6c Mus musculus ENSMUSG00000025571 N 0.846
TNRC6C Tetraodon nigroviridis ENSTNIG00000004178 N 0.846
TNRC6C Taeniopygia guttata ENSTGUG00000007733 N 0.846
TNRC6A Taeniopygia guttata ENSTGUG00000006142 N 0.846
TNRC6A Tupaia belangeri ENSTBEG00000014965 N 0.846
TNRC6C Tetraodon nigroviridis ENSTNIG00000005273 N 0.846
TNRC6C Takifugu rubripes ENSTRUG00000011685 N 0.846
TNRC6C Tursiops truncatus ENSTTRG00000010828 N 0.846
TNRC6A Tursiops truncatus ENSTTRG00000002008 N 0.846
TNRC6A Tarsius syrichta ENSTSYG00000012711 N 0.846
Tnrc6a Rattus norvegicus ENSRNOG00000024737 N 0.846
TNRC6C Pan troglodytes ENSPTRG00000009699 N 0.846
TNRC6A Ornithorhynchus anatinus ENSOANG00000007672 N 0.846
Tnrc6a Mus musculus ENSMUSG00000052707 N 0.846
TNRC6C Gasterosteus aculeatus ENSGACG00000012320 N 0.846
TNRC6C Ornithorhynchus anatinus ENSOANG00000009758 N 0.846
TNRC6A Oryctolagus cuniculus ENSOCUG00000004325 N 0.846
ENSPPYG00000008679 Pongo pygmaeus ENSPPYG00000008679 N 0.846
ENSPPYG00000007202 Pongo pygmaeus ENSPPYG00000007202 N 0.846
TNRC6C Oryzias latipes ENSORLG00000003327 N 0.846
TNRC6A Monodelphis domestica ENSMODG00000016348 N 0.846
TNRC6A Meleagris gallopavo ENSMGAG00000006455 N 0.846
TNRC6C Canis familiaris ENSCAFG00000005224 N 0.846
LOC100058134 Equus caballus ENSECAG00000012486 N 0.846
TNRC6A Equus caballus ENSECAG00000025056 N 0.846
TNRC6C Cavia porcellus ENSCPOG00000000467 N 0.846
Tnrc6a Dipodomys ordii ENSDORG00000014734 N 0.846
TNRC6A Canis familiaris ENSCAFG00000017531 N 0.846
TNRC6A Callithrix jacchus ENSCJAG00000020677 N 0.846
TNRC6C Dasypus novemcinctus ENSDNOG00000003247 N 0.846
TNRC6C Callithrix jacchus ENSCJAG00000019431 N 0.846
TNRC6A Choloepus hoffmanni ENSCHOG00000009374 N 0.846
TNRC6A Bos taurus ENSBTAG00000017999 N 0.846
TNRC6C Bos taurus ENSBTAG00000018658 N 0.846
TNRC6C Echinops telfairi ENSETEG00000005527 N 0.846
Ame_R006400 Ailuropoda melanoleuca Ame_R006400 N 0.846
TNRC6A Homo sapiens ENSG00000090905 N 0.846
TNRC6C Homo sapiens ENSG00000078687 N 0.846
Ame_R017991 Ailuropoda melanoleuca Ame_R017991 N 0.846
TNRC6C Anolis carolinensis ENSACAG00000016198 N 0.846
TNRC6C Felis catus ENSFCAG00000013005 N 0.846
TNRC6A Anolis carolinensis ENSACAG00000011857 N 0.846
tnrc6c Xenopus tropicalis ENSXETG00000019470 N 0.831
TNRC6C Takifugu rubripes ENSTRUG00000012583 N 0.831
TNRC6C Procavia capensis ENSPCAG00000012510 N 0.831
TNRC6A Oryzias latipes ENSORLG00000012798 N 0.831
TNRC6C Oryzias latipes ENSORLG00000009837 N 0.831
TNRC6A Ochotona princeps ENSOPRG00000005819 N 0.831
TNRC6B Sus scrofa ENSSSCG00000000078 N 0.800
TNRC6B Spermophilus tridecemlineatus ENSSTOG00000008927 N 0.800
TNRC6B Loxodonta africana ENSLAFG00000014473 N 0.800
TNRC6B Erinaceus europaeus ENSEEUG00000008690 N 0.800
TNRC6B Sorex araneus ENSSARG00000007971 N 0.800
Tnrc6b Rattus norvegicus ENSRNOG00000024907 N 0.800
TNRC6B Canis familiaris ENSCAFG00000001255 N 0.800
XR_024166.1 Pan troglodytes ENSPTRG00000014406 N 0.800
TNRC6B Pteropus vampyrus ENSPVAG00000004975 N 0.800
TNRC6B Taeniopygia guttata ENSTGUG00000010128 N 0.800
ENSTGUG00000010138 Taeniopygia guttata ENSTGUG00000010138 N 0.800
TNRC6B Homo sapiens ENSG00000100354 N 0.800
Ame_R002380 Ailuropoda melanoleuca Ame_R002380 N 0.800
TNRC6B Tursiops truncatus ENSTTRG00000011465 N 0.800
TNRC6B Tarsius syrichta ENSTSYG00000011836 N 0.800
TNRC6B Takifugu rubripes ENSTRUG00000016987 N 0.800
TNRC6B Gorilla gorilla ENSGGOG00000008444 N 0.800
TNRC6B Anolis carolinensis ENSACAG00000007281 N 0.800
TNRC6B Gallus gallus ENSGALG00000012050 N 0.800
ENSPPYG00000011849 Pongo pygmaeus ENSPPYG00000011849 N 0.800
TNRC6B Bos taurus ENSBTAG00000021076 N 0.800
ENSCJAG00000031596 Callithrix jacchus ENSCJAG00000031596 N 0.800
TNRC6B Myotis lucifugus ENSMLUG00000008765 N 0.800
TNRC6B Equus caballus ENSECAG00000009759 N 0.800
Tnrc6b Mus musculus ENSMUSG00000047888 N 0.800
TNRC6B Macaca mulatta ENSMMUG00000021345 N 0.800
TNRC6B Monodelphis domestica ENSMODG00000008960 N 0.800
TNRC6B Cavia porcellus ENSCPOG00000005705 N 0.800
TNRC6B Oryctolagus cuniculus ENSOCUG00000016128 N 0.800
TNRC6B Choloepus hoffmanni ENSCHOG00000010004 N 0.800
TNRC6B Meleagris gallopavo ENSMGAG00000012333 N 0.800
TNRC6B Ochotona princeps ENSOPRG00000012054 N 0.800
TNRC6B Microcebus murinus ENSMICG00000014056 N 0.800
TNRC6B Dasypus novemcinctus ENSDNOG00000012744 N 0.800
Tnrc6b Dipodomys ordii ENSDORG00000003386 N 0.800
TNRC6B Gasterosteus aculeatus ENSGACG00000004573 N 0.785
TNRC6B Danio rerio ENSDARG00000074161 N 0.785
TNRC6B Danio rerio ENSDARG00000076389 N 0.769
TNRC6B Oryzias latipes ENSORLG00000002794 N 0.769
TNRC6B Gasterosteus aculeatus ENSGACG00000007421 N 0.769
TNRC6C Otolemur garnettii ENSOGAG00000007197 N 0.754
TNRC6B Tupaia belangeri ENSTBEG00000017272 N 0.754
TNRC6A Myotis lucifugus ENSMLUG00000002701 N 0.738
GF19039 Drosophila ananassae FBgn0096051 N 0.723
TNRC6C Gasterosteus aculeatus ENSGACG00000019401 N 0.723
GL18179 Drosophila persimilis FBgn0155782 N 0.708
TNRC6A Echinops telfairi ENSETEG00000014658 N 0.708
GA16600-RA Drosophila pseudoobscura FBgn0076615 N 0.708
AGAP007802 Anopheles gambiae AGAP007802 N 0.708
BGIBMGA005589 Bombyx mori BGIBMGA005589 N 0.708