PASA_GEN_0100279 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PASA_GEN_0100279 T53845_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PASA_GEN_0100279 RRM 1447 1511

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

127 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIBMGA005589 Bombyx mori BGIBMGA005589 N 0.831
DGIL_AUG5s11561g1t1 Acyrtosiphon pisum DGIL_AUG5s11561g1t1 N 0.815
AGAP007802 Anopheles gambiae AGAP007802 N 0.785
TNRC6B Gasterosteus aculeatus ENSGACG00000004573 N 0.769
TNRC6B Myotis lucifugus ENSMLUG00000008765 N 0.754
TNRC6B Microcebus murinus ENSMICG00000014056 N 0.754
TNRC6B Danio rerio ENSDARG00000074161 N 0.754
ENSCJAG00000031596 Callithrix jacchus ENSCJAG00000031596 N 0.754
TNRC6B Tursiops truncatus ENSTTRG00000011465 N 0.754
TNRC6B Choloepus hoffmanni ENSCHOG00000010004 N 0.754
TNRC6B Cavia porcellus ENSCPOG00000005705 N 0.754
Tnrc6b Dipodomys ordii ENSDORG00000003386 N 0.754
TNRC6B Tarsius syrichta ENSTSYG00000011836 N 0.754
TNRC6B Erinaceus europaeus ENSEEUG00000008690 N 0.754
TNRC6B Homo sapiens ENSG00000100354 N 0.754
TNRC6B Loxodonta africana ENSLAFG00000014473 N 0.754
TNRC6B Monodelphis domestica ENSMODG00000008960 N 0.754
TNRC6B Equus caballus ENSECAG00000009759 N 0.754
TNRC6B Gorilla gorilla ENSGGOG00000008444 N 0.754
TNRC6B Macaca mulatta ENSMMUG00000021345 N 0.754
TNRC6B Anolis carolinensis ENSACAG00000007281 N 0.754
amel4_ncbi_hmm5263 Apis mellifera amel4_ncbi_hmm5263 N 0.754
XR_024166.1 Pan troglodytes ENSPTRG00000014406 N 0.754
TNRC6B Pteropus vampyrus ENSPVAG00000004975 N 0.754
TNRC6B Oryctolagus cuniculus ENSOCUG00000016128 N 0.754
TNRC6B Sorex araneus ENSSARG00000007971 N 0.754
TNRC6B Sus scrofa ENSSSCG00000000078 N 0.754
TNRC6B Spermophilus tridecemlineatus ENSSTOG00000008927 N 0.754
TNRC6B Bos taurus ENSBTAG00000021076 N 0.754
TNRC6B Canis familiaris ENSCAFG00000001255 N 0.754
TNRC6B Ochotona princeps ENSOPRG00000012054 N 0.754
Tnrc6b Rattus norvegicus ENSRNOG00000024907 N 0.754
ENSPPYG00000011849 Pongo pygmaeus ENSPPYG00000011849 N 0.754
Tnrc6b Mus musculus ENSMUSG00000047888 N 0.754
TNRC6C Loxodonta africana ENSLAFG00000011122 N 0.738
TNRC6C Pan troglodytes ENSPTRG00000009699 N 0.738
TNRC6B Gallus gallus ENSGALG00000012050 N 0.738
ENSTGUG00000010138 Taeniopygia guttata ENSTGUG00000010138 N 0.738
TNRC6C Gorilla gorilla ENSGGOG00000011304 N 0.738
TNRC6B Taeniopygia guttata ENSTGUG00000010128 N 0.738
TNRC6C Meleagris gallopavo ENSMGAG00000003906 N 0.738
TNRC6C Macaca mulatta ENSMMUG00000011924 N 0.738
TNRC6C Gallus gallus ENSGALG00000001725 N 0.738
TNRC6C Monodelphis domestica ENSMODG00000001785 N 0.738
TNRC6C Ornithorhynchus anatinus ENSOANG00000009758 N 0.738
TNRC6C Microcebus murinus ENSMICG00000003952 N 0.738
TNRC6C Taeniopygia guttata ENSTGUG00000007733 N 0.738
Tnrc6c Mus musculus ENSMUSG00000025571 N 0.738
TNRC6B Meleagris gallopavo ENSMGAG00000012333 N 0.738
TNRC6C Macropus eugenii ENSMEUG00000005104 N 0.738
TNRC6C Homo sapiens ENSG00000078687 N 0.738
TNRC6C Canis familiaris ENSCAFG00000005224 N 0.738
TNRC6C Bos taurus ENSBTAG00000018658 N 0.738
TNRC6C Callithrix jacchus ENSCJAG00000019431 N 0.738
TNRC6C Tursiops truncatus ENSTTRG00000010828 N 0.738
TNRC6B Danio rerio ENSDARG00000076389 N 0.738
TNRC6C Danio rerio ENSDARG00000076356 N 0.738
GA16600-RA Drosophila pseudoobscura FBgn0076615 N 0.738
TNRC6C Anolis carolinensis ENSACAG00000016198 N 0.738
Ame_R006400 Ailuropoda melanoleuca Ame_R006400 N 0.738
Ame_R002380 Ailuropoda melanoleuca Ame_R002380 N 0.738
CpipJ_CPIJ010645 Culex pipiens CpipJ_CPIJ010645 N 0.738
AAEL007436 Aedes aegypti AAEL007436 N 0.738
CPIJ010645 Culex quinquefasciatus CPIJ010645 N 0.738
GL18179 Drosophila persimilis FBgn0155782 N 0.738
TNRC6C Danio rerio ENSDARG00000076847 N 0.738
TNRC6C Cavia porcellus ENSCPOG00000000467 N 0.738
TNRC6C Felis catus ENSFCAG00000013005 N 0.738
TNRC6C Echinops telfairi ENSETEG00000005527 N 0.738
ENSPPYG00000008679 Pongo pygmaeus ENSPPYG00000008679 N 0.738
TNRC6B Takifugu rubripes ENSTRUG00000016987 N 0.738
TNRC6B Gasterosteus aculeatus ENSGACG00000007421 N 0.738
TNRC6B Dasypus novemcinctus ENSDNOG00000012744 N 0.738
LOC100058134 Equus caballus ENSECAG00000012486 N 0.738
TNRC6C Dasypus novemcinctus ENSDNOG00000003247 N 0.738
TNRC6C Danio rerio ENSDARG00000078036 N 0.738
TNRC6C Tetraodon nigroviridis ENSTNIG00000005273 N 0.723
Tnrc6a Rattus norvegicus ENSRNOG00000024737 N 0.723
GJ14351 Drosophila virilis FBgn0201564 N 0.723
TNRC6C Tetraodon nigroviridis ENSTNIG00000004178 N 0.723
TNRC6C Takifugu rubripes ENSTRUG00000011685 N 0.723
TNRC6B Tupaia belangeri ENSTBEG00000017272 N 0.723
GG16439 Drosophila erecta FBgn0108670 N 0.723
TNRC6A Tarsius syrichta ENSTSYG00000012711 N 0.723
tnrc6c Xenopus tropicalis ENSXETG00000019470 N 0.723
TNRC6A Taeniopygia guttata ENSTGUG00000006142 N 0.723
GF19039 Drosophila ananassae FBgn0096051 N 0.723
TNRC6A Tursiops truncatus ENSTTRG00000002008 N 0.723
TNRC6A Tupaia belangeri ENSTBEG00000014965 N 0.723
TNRC6A Meleagris gallopavo ENSMGAG00000006455 N 0.723
Tnrc6a Dipodomys ordii ENSDORG00000014734 N 0.723
TNRC6A Danio rerio ENSDARG00000079688 N 0.723
TNRC6A Equus caballus ENSECAG00000025056 N 0.723
TNRC6A Homo sapiens ENSG00000090905 N 0.723
TNRC6A Gallus gallus ENSGALG00000006068 N 0.723
ENSPPYG00000007202 Pongo pygmaeus ENSPPYG00000007202 N 0.723
TNRC6A Callithrix jacchus ENSCJAG00000020677 N 0.723
TNRC6A Choloepus hoffmanni ENSCHOG00000009374 N 0.723
AGAP007808 Anopheles gambiae AGAP007808 N 0.723
Ame_R017991 Ailuropoda melanoleuca Ame_R017991 N 0.723
TNRC6A Anolis carolinensis ENSACAG00000011857 N 0.723
TNRC6A Bos taurus ENSBTAG00000017999 N 0.723
TNRC6A Canis familiaris ENSCAFG00000017531 N 0.723
TNRC6A Gorilla gorilla ENSGGOG00000005137 N 0.723
TNRC6C Gasterosteus aculeatus ENSGACG00000012320 N 0.723
TNRC6A Ornithorhynchus anatinus ENSOANG00000007672 N 0.723
Tnrc6a Mus musculus ENSMUSG00000052707 N 0.723
TNRC6A Loxodonta africana ENSLAFG00000004209 N 0.723
TNRC6C Oryzias latipes ENSORLG00000003327 N 0.723
TNRC6C Procavia capensis ENSPCAG00000012510 N 0.723
TNRC6A Monodelphis domestica ENSMODG00000016348 N 0.723
TNRC6A Oryctolagus cuniculus ENSOCUG00000004325 N 0.723
TNRC6A Macaca mulatta ENSMMUG00000020428 N 0.723
TNRC6A Microcebus murinus ENSMICG00000001883 N 0.723
TNRC6A Macropus eugenii ENSMEUG00000015959 N 0.723
AAEL801228 Aedes aegypti AAEL007447 N 0.708
GM26772 Drosophila sechellia FBgn0181625 N 0.708
TNRC6A Gasterosteus aculeatus ENSGACG00000014332 N 0.708
GK13697 Drosophila willistoni FBgn0215705 N 0.708
GH23931 Drosophila grimshawi FBgn0131388 N 0.708
GD24374 Drosophila simulans FBgn0195715 N 0.708
TNRC6A Takifugu rubripes ENSTRUG00000009839 N 0.708
TNRC6C Takifugu rubripes ENSTRUG00000012583 N 0.708
TNRC6A Ochotona princeps ENSOPRG00000005819 N 0.708
gw Drosophila melanogaster FBgn0051992 N 0.708
TNRC6B Oryzias latipes ENSORLG00000002794 N 0.708
TNRC6C Oryzias latipes ENSORLG00000009837 N 0.708