ELAVL2 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000007867 T42264_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.967
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.967
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.967
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.934
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.934
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.934
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.783
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.783
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.783
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.783
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.783
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.783
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000019560 RRM 2 71
ENSTRUP00000019560 RRM 87 155
ENSTRUP00000019560 RRM 239 309

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTTG_01003 Puccinia triticina PTTG_01003 N 0.000
fgenesh1_pg.C_scaffold_135000007 Phytophthora ramorum fgenesh1_pg.C_scaffold_135000007 N 0.000
fgenesh1_pg.C_scaffold_1590000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1590000001 N 0.000
fgenesh1_pg.C_scaffold_17000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_17000001 N 0.000
fgenesh1_pg.C_scaffold_20000020 Phytophthora ramorum fgenesh1_pg.C_scaffold_20000020 N 0.000
fgenesh1_pg.C_scaffold_2072000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_2072000002 N 0.000
fgenesh1_pg.C_scaffold_2102000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2102000001 N 0.000
fgenesh1_pg.C_scaffold_23000077 Phytophthora ramorum fgenesh1_pg.C_scaffold_23000077 N 0.000
fgenesh1_pg.C_scaffold_2342000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2342000001 N 0.000
fgenesh1_pg.C_scaffold_2352000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2352000001 N 0.000
fgenesh1_pg.C_scaffold_315000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_315000002 N 0.000
fgenesh1_pg.C_scaffold_6000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_6000001 N 0.000
fgenesh1_pg.C_scaffold_1347000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1347000001 N 0.000
fgenesh1_pg.C_scaffold_1242000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1242000001 N 0.000
PTTG_04681 Puccinia triticina PTTG_04681 N 0.000
PTTG_05245 Puccinia triticina PTTG_05245 N 0.000
PTTG_05279 Puccinia triticina PTTG_05279 N 0.000
PTTG_05387 Puccinia triticina PTTG_05387 N 0.000
PTTG_06677 Puccinia triticina PTTG_06677 N 0.000
PTTG_08980 Puccinia triticina PTTG_08980 N 0.000
PTTG_10119 Puccinia triticina PTTG_10119 N 0.000
PTTG_10688 Puccinia triticina PTTG_10688 N 0.000
CJA16826 Caenorhabditis japonica CJA16826 N 0.000
CJA21349 Caenorhabditis japonica CJA21349 N 0.000
LOC_Os10g25990 Oryza sativa LOC_Os10g25990 N 0.000
fgenesh1_pg.C_scaffold_911000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_911000002 N 0.000