Rbp9 (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0010263 T43004_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6		 Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.750
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.750
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.750
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.741
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.741
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.741
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.701
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.701
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.701
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.701
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.701
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M124_0.6 RRM 51 121
M124_0.6 RRM 137 210
M124_0.6 RRM 302 372

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0077322 RRM 112 182
FBpp0077322 RRM 198 271
FBpp0077322 RRM 363 433
FBpp0077323 RRM 112 182
FBpp0077323 RRM 198 266
FBpp0077323 RRM 358 428
FBpp0077324 RRM 112 182
FBpp0077324 RRM 198 271
FBpp0077324 RRM 363 433
FBpp0077325 RRM 112 182
FBpp0077325 RRM 198 266
FBpp0077325 RRM 358 428
FBpp0099898 RRM 112 182
FBpp0099898 RRM 198 266
FBpp0099898 RRM 358 428
FBpp0288676 RRM 112 182
FBpp0288676 RRM 198 266
FBpp0288676 RRM 358 428
FBpp0288677 RRM 112 182
FBpp0288677 RRM 198 271
FBpp0288677 RRM 363 433

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

158 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GJ13991 Drosophila virilis FBgn0201209 I 0.995
GE18193 Drosophila yakuba FBgn0235624 I 0.995
GI11879 Drosophila mojavensis FBgn0134637 I 0.995
GM18380 Drosophila sechellia FBgn0173287 I 0.995
GG24901 Drosophila erecta FBgn0117030 I 0.995
GL26299 Drosophila persimilis FBgn0163881 I 0.995
GK14865 Drosophila willistoni FBgn0216870 I 0.991
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.991
GF14992 Drosophila ananassae FBgn0092017 I 0.991
GH13638 Drosophila grimshawi FBgn0121114 I 0.991
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.905
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.896
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.849
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.849
AGAP000965 Anopheles gambiae AGAP000965 I 0.848
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.839
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.839
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.806
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.802
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.792
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.783
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.750
LOC100051268 Equus caballus ENSECAG00000022284 I 0.750
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.750
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.750
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.750
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.750
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.750
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.750
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.750
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.750
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.750
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.750
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.750
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.750
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.750
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.750
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.750
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.750
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.750
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.750
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.750
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.750
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.750
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.750
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.750
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.750
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.750
Elavl4 Mus musculus ENSMUSG00000028546 I 0.750
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.750
ELAVL4 Homo sapiens ENSG00000162374 D 0.750
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.750
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.750
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.749
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.746
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.745
elavl2 Danio rerio ENSDARG00000040732 I 0.745
CBU92440 Xenopus laevis CBU92440 I 0.745
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.745
AAA96945 Xenopus laevis AAA96945 I 0.745
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.745
AAH99348 Xenopus laevis AAH99348 I 0.745
CBF67567 Xenopus laevis CBF67567 I 0.745
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.745
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.745
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.745
elavl4 Danio rerio ENSDARG00000045639 I 0.743
AAH94189 Xenopus laevis AAH94189 I 0.741
Elavl2 Mus musculus ENSMUSG00000008489 I 0.741
AAI70539 Xenopus laevis AAI70539 I 0.741
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.741
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.741
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.741
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.741
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.741
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.741
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.741
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.741
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.741
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.741
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.741
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.741
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.741
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.741
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.741
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.741
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.741
ELAVL2 Equus caballus ENSECAG00000020142 I 0.741
ELAVL2 Homo sapiens ENSG00000107105 D 0.741
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.741
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.741
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.741
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.741
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.741
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.741
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.741
AAA96943 Xenopus laevis AAA96943 I 0.737
Q91903 Xenopus laevis Q91903 I 0.737
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.736
CAA59430 Xenopus laevis CAA59430 I 0.732
elavl3 Danio rerio ENSDARG00000014420 I 0.726
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.726
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.726
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.726
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.726
187316 Helobdella robusta 187316 N 0.725
185541 Helobdella robusta 185541 I 0.720
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.720
ELAVL3 Homo sapiens ENSG00000196361 I 0.717
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.717
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.717
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.717
Elavl3 Mus musculus ENSMUSG00000003410 I 0.717
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.717
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.717
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.717
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.717
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.717
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.717
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.717
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.717
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.716
GM19036 Drosophila sechellia FBgn0173939 N 0.712
GG12756 Drosophila erecta FBgn0105043 N 0.712
GD16475 Drosophila simulans FBgn0188089 N 0.712
ISCW010302 Ixodes scapularis ISCW010302 N 0.711
AAI69769 Xenopus laevis AAI69769 I 0.709
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.709
AAA96944 Xenopus laevis AAA96944 I 0.709
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.709
Q91584 Xenopus laevis Q91584 I 0.709
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.708
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.706
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.706
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.706
AGAP001883 Anopheles gambiae AGAP001883 N 0.705
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.701
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.701
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.701
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.701
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.701
AAA96942 Xenopus laevis AAA96942 I 0.701
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.701
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.701
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.701
ELAVL1 Homo sapiens ENSG00000066044 D 0.701
ELAVL1 Felis catus ENSFCAG00000014947 I 0.701
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.701
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.701
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.701
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.701
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.701
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.701
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.701
LOAG_11702 Loa loa LOAG_11702 N 0.701
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.701
AAEL008164 Aedes aegypti AAEL008164 N 0.700