fgenesh1_pg.C_scaffold_911000002 (Phytophthora ramorum)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_911000002 T14071_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_911000002 CCHC ZF 95 112

Links

Other CCHC ZF family RBPs
Other Phytophthora ramorum RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_17000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_17000001 N 1.000
fgenesh1_pg.C_scaffold_1590000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1590000001 N 1.000
fgenesh1_pg.C_scaffold_135000007 Phytophthora ramorum fgenesh1_pg.C_scaffold_135000007 N 1.000
fgenesh1_pg.C_scaffold_20000020 Phytophthora ramorum fgenesh1_pg.C_scaffold_20000020 N 1.000
fgenesh1_pg.C_scaffold_2072000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_2072000002 N 1.000
fgenesh1_pg.C_scaffold_23000077 Phytophthora ramorum fgenesh1_pg.C_scaffold_23000077 N 1.000
fgenesh1_pg.C_scaffold_2342000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2342000001 N 1.000
fgenesh1_pg.C_scaffold_2102000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2102000001 N 1.000
fgenesh1_pg.C_scaffold_1347000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1347000001 N 1.000
fgenesh1_pg.C_scaffold_2352000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2352000001 N 1.000
fgenesh1_pg.C_scaffold_6000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_6000001 N 1.000
fgenesh1_pg.C_scaffold_1242000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1242000001 N 1.000
fgenesh1_pg.C_scaffold_315000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_315000002 N 1.000
fgenesh1_pg.C_scaffold_737000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_737000002 N 0.889
fgenesh1_pg.C_scaffold_58000098 Phytophthora ramorum fgenesh1_pg.C_scaffold_58000098 N 0.889
fgenesh1_pg.C_scaffold_49000015 Phytophthora ramorum fgenesh1_pg.C_scaffold_49000015 N 0.889
fgenesh1_pg.C_scaffold_937000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_937000002 N 0.889
fgenesh1_pg.C_scaffold_32000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_32000002 N 0.889
177549 Helobdella robusta 177549 N 0.778
BRADI4G42725 Brachypodium distachyon BRADI4G42725 N 0.778
BRADI3G23364 Brachypodium distachyon BRADI3G23364 N 0.778
PK23596.1 Cannabis sativa PK23596.1 N 0.778
nasonia_NCBI_hmm181224 Nasonia vitripennis nasonia_NCBI_hmm181224 N 0.778
SS1G_03724 Sclerotinia sclerotiorum SS1G_03724 N 0.778
CHGG_06816 Chaetomium globosum CHGG_06816 N 0.778
CHGG_00235 Chaetomium globosum CHGG_00235 N 0.778
SS1G_05465 Sclerotinia sclerotiorum SS1G_05465 N 0.778
SS1G_04258 Sclerotinia sclerotiorum SS1G_04258 N 0.778
SS1G_06437 Sclerotinia sclerotiorum SS1G_06437 N 0.778
SS1G_14517 Sclerotinia sclerotiorum SS1G_14517 N 0.778
SS1G_14025 Sclerotinia sclerotiorum SS1G_14025 N 0.778
SS1G_09531 Sclerotinia sclerotiorum SS1G_09531 N 0.778
LOC_Os11g45610 Oryza sativa LOC_Os11g45610 N 0.722
LOC_Os12g07910 Oryza sativa LOC_Os12g07910 N 0.722
LOC_Os11g06960 Oryza sativa LOC_Os11g06960 N 0.722
cassava4194.m1 Manihot esculenta cassava4194.m1 N 0.722
fgenesh1_pg.C_scaffold_9000406 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_9000406 N 0.722
LOC_Os05g03600 Oryza sativa LOC_Os05g03600 N 0.722
Minc05817 Meloidogyne incognita Minc05817 N 0.722
CPSG_00634 Coccidioides posadasii CPSG_00634 N 0.722
DGIL_AUG5s2073g1t1 Acyrtosiphon pisum DGIL_AUG5s2073g1t1 N 0.722
DGIL_AUG5s2421g1t1 Acyrtosiphon pisum DGIL_AUG5s2421g1t1 N 0.722
Genemark.5117_g Heterobasidion annosum Genemark.5117_g N 0.722
fgenesh2_pg.C_scaffold_14000029 Heterobasidion annosum fgenesh2_pg.C_scaffold_14000029 N 0.722
Glyma10g28100.1 Glycine max Glyma10g28100.1 N 0.722
Glyma20g22120.1 Glycine max Glyma20g22120.1 N 0.722
e_gw1.10.905.1 Heterobasidion annosum e_gw1.10.905.1 N 0.722
EuGene8000075 Heterobasidion annosum EuGene8000075 N 0.722
CJA28798 Caenorhabditis japonica CJA28798 N 0.722
LOC_Os01g70540 Oryza sativa LOC_Os01g70540 N 0.722
LOC_Os08g32590 Oryza sativa LOC_Os08g32590 N 0.722
LOC_Os09g16100 Oryza sativa LOC_Os09g16100 N 0.722
LOC_Os10g07460 Oryza sativa LOC_Os10g07460 N 0.722
LOC_Os10g07578 Oryza sativa LOC_Os10g07578 N 0.722
LOC_Os08g28530 Oryza sativa LOC_Os08g28530 N 0.722
LOC_Os07g05600 Oryza sativa LOC_Os07g05600 N 0.722
LOC_Os04g12000 Oryza sativa LOC_Os04g12000 N 0.722
LOC_Os04g18244 Oryza sativa LOC_Os04g18244 N 0.722
LOC_Os04g24570 Oryza sativa LOC_Os04g24570 N 0.722
LOC_Os10g29420 Oryza sativa LOC_Os10g29420 N 0.722