CELF3 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000012064 T42327_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.807
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000030511 RRM 1 33
ENSTRUP00000030511 RRM 52 120
ENSTRUP00000030511 RRM 351 421
ENSTRUP00000030512 RRM 1 33
ENSTRUP00000030512 RRM 52 120
ENSTRUP00000030512 RRM 275 345
ENSTRUP00000030513 RRM 49 117
ENSTRUP00000030513 RRM 334 404
ENSTRUP00000030514 RRM 1 30
ENSTRUP00000030514 RRM 58 126
ENSTRUP00000030514 RRM 317 355

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

107 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK21303.1 Cannabis sativa PK21303.1 N 0.000
PDK_20s1454181g001 Phoenix dactylifera PDK_20s1454181g001 N 0.000
MDP0000173498 Malus x domestica MDP0000173498 N 0.000
Medtr7g092780 Medicago truncatula Medtr7g092780 N 0.000
AC202489_30 Medicago truncatula AC202489_30 N 0.000
Glyma18g48360.1 Glycine max Glyma18g48360.1 N 0.000
Cucsa.256720 Cucumis sativus Cucsa.256720 N 0.000
cassava12985.valid.m1 Manihot esculenta cassava12985.valid.m1 N 0.000
cassava12984.valid.m1 Manihot esculenta cassava12984.valid.m1 N 0.000
29709.m001182 Ricinus communis 29709.m001182 N 0.000
B9MV49_POPTR Populus trichocarpa POPTR_0014s05040 N 0.000
B9GP81_POPTR Populus trichocarpa POPTR_0002s14050 N 0.000
LOC_Os04g45930 Oryza sativa LOC_Os04g45930 N 0.000
GSVIVG00018314001 Vitis vinifera GSVIVG00018314001 N 0.000
ppa002214m Prunus persica ppa002214m N 0.000