CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF3
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000012064
T42327_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.807
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000030511
RRM
1
33
LSPGCAFLTYCARESALIAQNALHEQKTLPGMN
ENSTRUP00000030511
RRM
52
120
LFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS
ENSTRUP00000030511
RRM
351
421
IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
ENSTRUP00000030512
RRM
1
33
LSPGCAFLTYCARESALIAQNALHEQKTLPGMN
ENSTRUP00000030512
RRM
52
120
LFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS
ENSTRUP00000030512
RRM
275
345
IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
ENSTRUP00000030513
RRM
49
117
LFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS
ENSTRUP00000030513
RRM
334
404
IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
ENSTRUP00000030514
RRM
1
30
GCAFLTYCARESALIAQNALHEQKTLPGMN
ENSTRUP00000030514
RRM
58
126
LFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS
ENSTRUP00000030514
RRM
317
355
QQPQQLQQREGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
107 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK21303.1
Cannabis sativa
PK21303.1
N
0.000
PDK_20s1454181g001
Phoenix dactylifera
PDK_20s1454181g001
N
0.000
MDP0000173498
Malus x domestica
MDP0000173498
N
0.000
Medtr7g092780
Medicago truncatula
Medtr7g092780
N
0.000
AC202489_30
Medicago truncatula
AC202489_30
N
0.000
Glyma18g48360.1
Glycine max
Glyma18g48360.1
N
0.000
Cucsa.256720
Cucumis sativus
Cucsa.256720
N
0.000
cassava12985.valid.m1
Manihot esculenta
cassava12985.valid.m1
N
0.000
cassava12984.valid.m1
Manihot esculenta
cassava12984.valid.m1
N
0.000
29709.m001182
Ricinus communis
29709.m001182
N
0.000
B9MV49_POPTR
Populus trichocarpa
POPTR_0014s05040
N
0.000
B9GP81_POPTR
Populus trichocarpa
POPTR_0002s14050
N
0.000
LOC_Os04g45930
Oryza sativa
LOC_Os04g45930
N
0.000
GSVIVG00018314001
Vitis vinifera
GSVIVG00018314001
N
0.000
ppa002214m
Prunus persica
ppa002214m
N
0.000